Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DERL1 | ENSPTRP00000089993 | ENSPTRP00000035139 | ENSPTRP00000089993 | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | annotation not available | 0.426 |
DERL1 | HM13 | ENSPTRP00000035139 | ENSPTRP00000087015 | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | Histocompatibility minor 13. | 0.528 |
DERL1 | HSP90B1 | ENSPTRP00000035139 | ENSPTRP00000077551 | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | Heat shock protein 90 beta family member 1. | 0.426 |
DERL1 | RNF139 | ENSPTRP00000035139 | ENSPTRP00000035174 | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | Ring finger protein 139. | 0.851 |
DERL1 | SEC61A1 | ENSPTRP00000035139 | ENSPTRP00000068673 | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | SEC61 translocon alpha 1 subunit. | 0.635 |
ENSPTRP00000089993 | DERL1 | ENSPTRP00000089993 | ENSPTRP00000035139 | annotation not available | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | 0.426 |
ENSPTRP00000089993 | HM13 | ENSPTRP00000089993 | ENSPTRP00000087015 | annotation not available | Histocompatibility minor 13. | 0.544 |
HM13 | DERL1 | ENSPTRP00000087015 | ENSPTRP00000035139 | Histocompatibility minor 13. | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | 0.528 |
HM13 | ENSPTRP00000089993 | ENSPTRP00000087015 | ENSPTRP00000089993 | Histocompatibility minor 13. | annotation not available | 0.544 |
HM13 | HMOX1 | ENSPTRP00000087015 | ENSPTRP00000024624 | Histocompatibility minor 13. | Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. | 0.565 |
HM13 | HSP90B1 | ENSPTRP00000087015 | ENSPTRP00000077551 | Histocompatibility minor 13. | Heat shock protein 90 beta family member 1. | 0.544 |
HM13 | MCTS1 | ENSPTRP00000087015 | ENSPTRP00000057617 | Histocompatibility minor 13. | Malignant T-cell-amplified sequence. | 0.690 |
HM13 | RNF139 | ENSPTRP00000087015 | ENSPTRP00000035174 | Histocompatibility minor 13. | Ring finger protein 139. | 0.767 |
HM13 | SEC61A1 | ENSPTRP00000087015 | ENSPTRP00000068673 | Histocompatibility minor 13. | SEC61 translocon alpha 1 subunit. | 0.495 |
HM13 | SSR2 | ENSPTRP00000087015 | ENSPTRP00000082519 | Histocompatibility minor 13. | Translocon-associated protein subunit beta; TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. | 0.496 |
HM13 | SSR3 | ENSPTRP00000087015 | ENSPTRP00000079456 | Histocompatibility minor 13. | Signal sequence receptor, gamma (Translocon-associated protein gamma). | 0.491 |
HM13 | USH2A | ENSPTRP00000087015 | ENSPTRP00000057764 | Histocompatibility minor 13. | USH2A isoform 2. | 0.584 |
HMOX1 | HM13 | ENSPTRP00000024624 | ENSPTRP00000087015 | Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. | Histocompatibility minor 13. | 0.565 |
HSP90B1 | DERL1 | ENSPTRP00000077551 | ENSPTRP00000035139 | Heat shock protein 90 beta family member 1. | Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. | 0.426 |
HSP90B1 | HM13 | ENSPTRP00000077551 | ENSPTRP00000087015 | Heat shock protein 90 beta family member 1. | Histocompatibility minor 13. | 0.544 |
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