TUBB1 protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DYNC1H1	ENSPTRP00000091139	ENSPTRP00000079030	ENSPTRP00000091139	Dynein, cytoplasmic 1, heavy chain 1.	annotation not available	0.613
DYNC1H1	PEX26	ENSPTRP00000079030	ENSPTRP00000024195	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha-8 chain.	0.756
DYNC1H1	TUBA1C	ENSPTRP00000079030	ENSPTRP00000071873	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.797
DYNC1H1	TUBA4A	ENSPTRP00000079030	ENSPTRP00000022120	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.757
DYNC1H1	TUBAL3	ENSPTRP00000079030	ENSPTRP00000003816	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.730
DYNC1H1	TUBB1	ENSPTRP00000079030	ENSPTRP00000023535	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.880
DYNC1H1	TUBB6	ENSPTRP00000079030	ENSPTRP00000055038	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.613
ENSPTRP00000091139	DYNC1H1	ENSPTRP00000091139	ENSPTRP00000079030	annotation not available	Dynein, cytoplasmic 1, heavy chain 1.	0.613
ENSPTRP00000091139	PEX26	ENSPTRP00000091139	ENSPTRP00000024195	annotation not available	Tubulin alpha-8 chain.	0.620
ENSPTRP00000091139	TUBA1C	ENSPTRP00000091139	ENSPTRP00000071873	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.667
ENSPTRP00000091139	TUBA4A	ENSPTRP00000091139	ENSPTRP00000022120	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.845
ENSPTRP00000091139	TUBAL3	ENSPTRP00000091139	ENSPTRP00000003816	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.627
ENSPTRP00000091139	TUBB1	ENSPTRP00000091139	ENSPTRP00000023535	annotation not available	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.891
EPB41L4B	SCNN1G	ENSPTRP00000036284	ENSPTRP00000013456	EPB41L4B isoform 2.	Amiloride-sensitive sodium channel subunit gamma; Sodium permeable non-voltage-sensitive ion channel inhibited by the diuretic amiloride. Mediates the electrodiffusion of the luminal sodium (and water, which follows osmotically) through the apical membrane of epithelial cells. Plays an essential role in electrolyte and blood pressure homeostasis, but also in airway surface liquid homeostasis, which is important for proper clearance of mucus. Controls the reabsorption of sodium in kidney, colon, lung and sweat glands. Also plays a role in taste perception.	0.871
EPB41L4B	TUBB1	ENSPTRP00000036284	ENSPTRP00000023535	EPB41L4B isoform 2.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.880
LOC736481	PEX26	ENSPTRP00000066795	ENSPTRP00000024195	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Tubulin alpha-8 chain.	0.900
LOC736481	TUBA1C	ENSPTRP00000066795	ENSPTRP00000071873	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.900
LOC736481	TUBA4A	ENSPTRP00000066795	ENSPTRP00000022120	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.900
LOC736481	TUBAL3	ENSPTRP00000066795	ENSPTRP00000003816	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.900
LOC736481	TUBB1	ENSPTRP00000066795	ENSPTRP00000023535	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.900