TRA2B protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPTRP00000062255	ENSPTRP00000078685	ENSPTRP00000062255	ENSPTRP00000078685	annotation not available	annotation not available	0.817
ENSPTRP00000062255	SRSF1	ENSPTRP00000062255	ENSPTRP00000090781	annotation not available	Serine and arginine rich splicing factor 1.	0.945
ENSPTRP00000062255	SRSF10	ENSPTRP00000062255	ENSPTRP00000052680	annotation not available	Serine and arginine rich splicing factor 10.	0.653
ENSPTRP00000062255	SRSF2	ENSPTRP00000062255	ENSPTRP00000043428	annotation not available	Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...]	0.899
ENSPTRP00000062255	SRSF7	ENSPTRP00000062255	ENSPTRP00000020349	annotation not available	Serine and arginine rich splicing factor 7.	0.986
ENSPTRP00000062255	SRSF9	ENSPTRP00000062255	ENSPTRP00000009392	annotation not available	Serine and arginine rich splicing factor 9.	0.764
ENSPTRP00000062255	TRA2A	ENSPTRP00000062255	ENSPTRP00000032448	annotation not available	Transformer 2 alpha homolog.	0.817
ENSPTRP00000062255	TRA2B	ENSPTRP00000062255	ENSPTRP00000027026	annotation not available	Transformer 2 beta homolog.	0.973
ENSPTRP00000078685	ENSPTRP00000062255	ENSPTRP00000078685	ENSPTRP00000062255	annotation not available	annotation not available	0.817
ENSPTRP00000078685	ENSPTRP00000084315	ENSPTRP00000078685	ENSPTRP00000084315	annotation not available	annotation not available	0.817
ENSPTRP00000078685	SRSF1	ENSPTRP00000078685	ENSPTRP00000090781	annotation not available	Serine and arginine rich splicing factor 1.	0.887
ENSPTRP00000078685	SRSF10	ENSPTRP00000078685	ENSPTRP00000052680	annotation not available	Serine and arginine rich splicing factor 10.	0.896
ENSPTRP00000078685	SRSF2	ENSPTRP00000078685	ENSPTRP00000043428	annotation not available	Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...]	0.716
ENSPTRP00000078685	SRSF3	ENSPTRP00000078685	ENSPTRP00000069080	annotation not available	Serine and arginine rich splicing factor 3.	0.817
ENSPTRP00000078685	SRSF7	ENSPTRP00000078685	ENSPTRP00000020349	annotation not available	Serine and arginine rich splicing factor 7.	0.884
ENSPTRP00000078685	SRSF9	ENSPTRP00000078685	ENSPTRP00000009392	annotation not available	Serine and arginine rich splicing factor 9.	0.740
ENSPTRP00000078685	TRA2B	ENSPTRP00000078685	ENSPTRP00000027026	annotation not available	Transformer 2 beta homolog.	0.966
ENSPTRP00000084315	ENSPTRP00000078685	ENSPTRP00000084315	ENSPTRP00000078685	annotation not available	annotation not available	0.817
ENSPTRP00000084315	SRSF1	ENSPTRP00000084315	ENSPTRP00000090781	annotation not available	Serine and arginine rich splicing factor 1.	0.945
ENSPTRP00000084315	SRSF10	ENSPTRP00000084315	ENSPTRP00000052680	annotation not available	Serine and arginine rich splicing factor 10.	0.653