TUBB protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DYNC1H1	ENSPTRP00000063748	ENSPTRP00000079030	ENSPTRP00000063748	Dynein, cytoplasmic 1, heavy chain 1.	annotation not available	0.731
DYNC1H1	ENSPTRP00000071983	ENSPTRP00000079030	ENSPTRP00000071983	Dynein, cytoplasmic 1, heavy chain 1.	annotation not available	0.796
DYNC1H1	LOC107973630	ENSPTRP00000079030	ENSPTRP00000021312	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.731
DYNC1H1	TUBA1A	ENSPTRP00000079030	ENSPTRP00000008374	Dynein, cytoplasmic 1, heavy chain 1.	Detyrosinated tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity).	0.825
DYNC1H1	TUBA1B	ENSPTRP00000079030	ENSPTRP00000065915	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.762
DYNC1H1	TUBA1C	ENSPTRP00000079030	ENSPTRP00000071873	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.797
DYNC1H1	TUBA4A	ENSPTRP00000079030	ENSPTRP00000022120	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.757
DYNC1H1	TUBAL3	ENSPTRP00000079030	ENSPTRP00000003816	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.730
DYNC1H1	TUBB	ENSPTRP00000079030	ENSPTRP00000003471	Dynein, cytoplasmic 1, heavy chain 1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain; Belongs to the tubulin family.	0.891
ENSPTRP00000063748	DYNC1H1	ENSPTRP00000063748	ENSPTRP00000079030	annotation not available	Dynein, cytoplasmic 1, heavy chain 1.	0.731
ENSPTRP00000063748	ENSPTRP00000071983	ENSPTRP00000063748	ENSPTRP00000071983	annotation not available	annotation not available	0.726
ENSPTRP00000063748	LOC736481	ENSPTRP00000063748	ENSPTRP00000066795	annotation not available	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.900
ENSPTRP00000063748	TUBA1A	ENSPTRP00000063748	ENSPTRP00000008374	annotation not available	Detyrosinated tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity).	0.735
ENSPTRP00000063748	TUBA1B	ENSPTRP00000063748	ENSPTRP00000065915	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.663
ENSPTRP00000063748	TUBA1C	ENSPTRP00000063748	ENSPTRP00000071873	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.736
ENSPTRP00000063748	TUBA4A	ENSPTRP00000063748	ENSPTRP00000022120	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.803
ENSPTRP00000063748	TUBB	ENSPTRP00000063748	ENSPTRP00000003471	annotation not available	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain; Belongs to the tubulin family.	0.880
ENSPTRP00000071983	DYNC1H1	ENSPTRP00000071983	ENSPTRP00000079030	annotation not available	Dynein, cytoplasmic 1, heavy chain 1.	0.796
ENSPTRP00000071983	ENSPTRP00000063748	ENSPTRP00000071983	ENSPTRP00000063748	annotation not available	annotation not available	0.726
ENSPTRP00000071983	LOC107973630	ENSPTRP00000071983	ENSPTRP00000021312	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.726