TBCC protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL2	ARL3	ENSPTRP00000058328	ENSPTRP00000082289	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	ADP-ribosylation factor-like 3; Belongs to the small GTPase superfamily. Arf family.	0.465
ARL2	ENSPTRP00000071983	ENSPTRP00000058328	ENSPTRP00000071983	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	annotation not available	0.642
ARL2	TBCC	ENSPTRP00000058328	ENSPTRP00000031050	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor C.	0.831
ARL2	TBCD	ENSPTRP00000058328	ENSPTRP00000086064	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	TBCD isoform 2.	0.957
ARL2	TBCE	ENSPTRP00000058328	ENSPTRP00000060023	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	TBCE isoform 2.	0.842
ARL2	TUBA1A	ENSPTRP00000058328	ENSPTRP00000008374	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	Detyrosinated tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity).	0.608
ARL2	TUBA1B	ENSPTRP00000058328	ENSPTRP00000065915	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.599
ARL2	TUBA1C	ENSPTRP00000058328	ENSPTRP00000071873	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.608
ARL2	TUBA4A	ENSPTRP00000058328	ENSPTRP00000022120	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.608
ARL3	ARL2	ENSPTRP00000082289	ENSPTRP00000058328	ADP-ribosylation factor-like 3; Belongs to the small GTPase superfamily. Arf family.	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	0.465
ARL3	TBCC	ENSPTRP00000082289	ENSPTRP00000031050	ADP-ribosylation factor-like 3; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor C.	0.887
ARL3	TBCD	ENSPTRP00000082289	ENSPTRP00000086064	ADP-ribosylation factor-like 3; Belongs to the small GTPase superfamily. Arf family.	TBCD isoform 2.	0.448
ENSPTRP00000071983	ARL2	ENSPTRP00000071983	ENSPTRP00000058328	annotation not available	ARL2-SNX15 isoform 1; Belongs to the small GTPase superfamily. Arf family.	0.642
ENSPTRP00000071983	TBCC	ENSPTRP00000071983	ENSPTRP00000031050	annotation not available	Tubulin folding cofactor C.	0.634
ENSPTRP00000071983	TBCD	ENSPTRP00000071983	ENSPTRP00000086064	annotation not available	TBCD isoform 2.	0.708
ENSPTRP00000071983	TBCE	ENSPTRP00000071983	ENSPTRP00000060023	annotation not available	TBCE isoform 2.	0.592
ENSPTRP00000071983	TUBA1A	ENSPTRP00000071983	ENSPTRP00000008374	annotation not available	Detyrosinated tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity).	0.931
ENSPTRP00000071983	TUBA1B	ENSPTRP00000071983	ENSPTRP00000065915	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.814
ENSPTRP00000071983	TUBA1C	ENSPTRP00000071983	ENSPTRP00000071873	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.933
ENSPTRP00000071983	TUBA4A	ENSPTRP00000071983	ENSPTRP00000022120	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.898