TWISTNB protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD3EAP	POLR1A	ENSPTRP00000019137	ENSPTRP00000020836	CD3EAP isoform 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CD3EAP	POLR1B	ENSPTRP00000019137	ENSPTRP00000071178	CD3EAP isoform 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CD3EAP	POLR1C	ENSPTRP00000019137	ENSPTRP00000082501	CD3EAP isoform 1.	Polymerase (RNA) I polypeptide C, 30kDa.	0.997
CD3EAP	POLR1D	ENSPTRP00000019137	ENSPTRP00000053601	CD3EAP isoform 1.	Polymerase (RNA) I polypeptide D, 16kDa.	0.996
CD3EAP	POLR1E	ENSPTRP00000019137	ENSPTRP00000081004	CD3EAP isoform 1.	RNA polymerase I subunit E.	0.999
CD3EAP	POLR2E	ENSPTRP00000019137	ENSPTRP00000073495	CD3EAP isoform 1.	Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa.	0.999
CD3EAP	POLR2K	ENSPTRP00000019137	ENSPTRP00000035005	CD3EAP isoform 1.	Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa.	0.997
CD3EAP	POLR2L	ENSPTRP00000019137	ENSPTRP00000068944	CD3EAP isoform 1.	RNA polymerase II subunit L.	0.996
CD3EAP	TWISTNB	ENSPTRP00000019137	ENSPTRP00000032393	CD3EAP isoform 1.	TWISTNB isoform 1.	0.999
CD3EAP	ZNRD1	ENSPTRP00000019137	ENSPTRP00000030553	CD3EAP isoform 1.	DNA-directed RNA polymerase I subunit RPA12; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase I which synthesizes ribosomal RNA precursors.	0.998
POLR1A	CD3EAP	ENSPTRP00000020836	ENSPTRP00000019137	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CD3EAP isoform 1.	0.999
POLR1A	POLR1B	ENSPTRP00000020836	ENSPTRP00000071178	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1A	POLR1C	ENSPTRP00000020836	ENSPTRP00000082501	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) I polypeptide C, 30kDa.	0.999
POLR1A	POLR1D	ENSPTRP00000020836	ENSPTRP00000053601	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) I polypeptide D, 16kDa.	0.999
POLR1A	POLR1E	ENSPTRP00000020836	ENSPTRP00000081004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase I subunit E.	0.999
POLR1A	POLR2E	ENSPTRP00000020836	ENSPTRP00000073495	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa.	0.999
POLR1A	POLR2K	ENSPTRP00000020836	ENSPTRP00000035005	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa.	0.997
POLR1A	POLR2L	ENSPTRP00000020836	ENSPTRP00000068944	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit L.	0.999
POLR1A	TWISTNB	ENSPTRP00000020836	ENSPTRP00000032393	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TWISTNB isoform 1.	0.999
POLR1A	ZNRD1	ENSPTRP00000020836	ENSPTRP00000030553	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase I subunit RPA12; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase I which synthesizes ribosomal RNA precursors.	0.999