DBNL protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAP1	CAPZB	ENSPTRP00000001011	ENSPTRP00000072044	Adenylyl cyclase-associated protein; Belongs to the CAP family.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.657
CAP1	DBNL	ENSPTRP00000001011	ENSPTRP00000032682	Adenylyl cyclase-associated protein; Belongs to the CAP family.	DBNL isoform 5.	0.575
CAP1	LCP1	ENSPTRP00000001011	ENSPTRP00000009959	Adenylyl cyclase-associated protein; Belongs to the CAP family.	Lymphocyte cytosolic protein 1.	0.490
CAPZB	CAP1	ENSPTRP00000072044	ENSPTRP00000001011	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.657
CAPZB	DBNL	ENSPTRP00000072044	ENSPTRP00000032682	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	DBNL isoform 5.	0.708
CAPZB	LCP1	ENSPTRP00000072044	ENSPTRP00000009959	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Lymphocyte cytosolic protein 1.	0.745
DBNL	CAP1	ENSPTRP00000032682	ENSPTRP00000001011	DBNL isoform 5.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.575
DBNL	CAPZB	ENSPTRP00000032682	ENSPTRP00000072044	DBNL isoform 5.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.708
DBNL	FGD6	ENSPTRP00000032682	ENSPTRP00000090858	DBNL isoform 5.	FGD6 isoform 1.	0.569
DBNL	HOMER2	ENSPTRP00000032682	ENSPTRP00000012618	DBNL isoform 5.	Homer scaffold protein 2.	0.597
DBNL	LCP1	ENSPTRP00000032682	ENSPTRP00000009959	DBNL isoform 5.	Lymphocyte cytosolic protein 1.	0.560
DBNL	MAP4K1	ENSPTRP00000032682	ENSPTRP00000071600	DBNL isoform 5.	Mitogen-activated protein kinase kinase kinase kinase 1; May play a role in the response to environmental stress. Appears to act upstream of the JUN N-terminal pathway.	0.571
DBNL	NEURL4	ENSPTRP00000032682	ENSPTRP00000079946	DBNL isoform 5.	Neuralized E3 ubiquitin protein ligase 4.	0.575
DBNL	SH2D4A	ENSPTRP00000032682	ENSPTRP00000034305	DBNL isoform 5.	SH2 domain containing 4A.	0.700
DBNL	SH3BP2	ENSPTRP00000032682	ENSPTRP00000086978	DBNL isoform 5.	SH3 domain binding protein 2.	0.562
DBNL	ZMYND8	ENSPTRP00000032682	ENSPTRP00000023370	DBNL isoform 5.	ZMYND8 isoform 21.	0.625
FGD6	DBNL	ENSPTRP00000090858	ENSPTRP00000032682	FGD6 isoform 1.	DBNL isoform 5.	0.569
HOMER2	DBNL	ENSPTRP00000012618	ENSPTRP00000032682	Homer scaffold protein 2.	DBNL isoform 5.	0.597
LCP1	CAP1	ENSPTRP00000009959	ENSPTRP00000001011	Lymphocyte cytosolic protein 1.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.490
LCP1	CAPZB	ENSPTRP00000009959	ENSPTRP00000072044	Lymphocyte cytosolic protein 1.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.745