STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRM3SRRM3 isoform 2. (653 aa)    
Predicted Functional Partners:
CWC22
CWC22 spliceosome-associated protein homolog.
    
 0.876
CDC40
Cell division cycle 40 homolog.
   
 0.874
DHX38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.866
SYF2
SYF2 homolog, RNA splicing factor.
    
 0.860
YJU2
Coiled-coil domain containing 94.
   
 0.825
CWC25
CWC25 spliceosome-associated protein homolog.
   
 0.808
SLU7
Ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific).
    
 0.804
CDC5L
CDC5 cell division cycle 5-like.
   
 
 0.802
PRPF8
PRP8 pre-mRNA processing factor 8 homolog.
   
 
 0.794
SNRPD2
Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.
    
 0.787
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.