STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCAD1SMARCAD1 isoform 4. (1026 aa)    
Predicted Functional Partners:
TRIM28
Tripartite motif containing 28.
   
 
 0.987
MSH2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.872
ZNF93
ZNF93 isoform 2.
    
 
 0.804
EXO1
EXO1 isoform 1.
    
 
 0.771
DNA2
DNA2 isoform 3.
    
 
 0.686
TRIM33
Tripartite motif containing 33.
   
 
 0.676
H2AC20
Histone H2A; Belongs to the histone H2A family.
    
 
 0.615
TRIM24
Tripartite motif containing 24.
   
 
 0.563
TRIM24-2
Tripartite motif containing 24.
   
 
 0.563
TP53BP1
Tumor protein p53 binding protein 1.
   
 
 0.559
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.