UBTF protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHD4	TAF1A	ENSPTRP00000083768	ENSPTRP00000003364	Chromodomain helicase DNA binding protein 4.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.629
CHD4	TAF1D	ENSPTRP00000083768	ENSPTRP00000054254	Chromodomain helicase DNA binding protein 4.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.438
CHD4	UBTF	ENSPTRP00000083768	ENSPTRP00000075608	Chromodomain helicase DNA binding protein 4.	Upstream binding transcription factor, RNA polymerase I.	0.874
MSX1	POLR1A	ENSPTRP00000055966	ENSPTRP00000020836	Homeobox protein MSX-1; Acts as a transcriptional repressor. May play a role in limb- pattern formation. Acts in cranofacial development and specifically in odontogenesis (By similarity).	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.406
MSX1	TACC2	ENSPTRP00000055966	ENSPTRP00000005322	Homeobox protein MSX-1; Acts as a transcriptional repressor. May play a role in limb- pattern formation. Acts in cranofacial development and specifically in odontogenesis (By similarity).	Transforming acidic coiled-coil containing protein 2.	0.407
MSX1	UBTF	ENSPTRP00000055966	ENSPTRP00000075608	Homeobox protein MSX-1; Acts as a transcriptional repressor. May play a role in limb- pattern formation. Acts in cranofacial development and specifically in odontogenesis (By similarity).	Upstream binding transcription factor, RNA polymerase I.	0.793
POLR1A	MSX1	ENSPTRP00000020836	ENSPTRP00000055966	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Homeobox protein MSX-1; Acts as a transcriptional repressor. May play a role in limb- pattern formation. Acts in cranofacial development and specifically in odontogenesis (By similarity).	0.406
POLR1A	POLR1B	ENSPTRP00000020836	ENSPTRP00000071178	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1A	POLR1E	ENSPTRP00000020836	ENSPTRP00000081004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase I subunit E.	0.999
POLR1A	RRN3	ENSPTRP00000020836	ENSPTRP00000013308	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RRN3 homolog, RNA polymerase I transcription factor.	0.975
POLR1A	SIRT7	ENSPTRP00000020836	ENSPTRP00000016642	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	SIRT7 isoform 2.	0.740
POLR1A	TAF1A	ENSPTRP00000020836	ENSPTRP00000003364	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.709
POLR1A	TAF1D	ENSPTRP00000020836	ENSPTRP00000054254	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.692
POLR1A	UBTF	ENSPTRP00000020836	ENSPTRP00000075608	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Upstream binding transcription factor, RNA polymerase I.	0.924
POLR1B	POLR1A	ENSPTRP00000071178	ENSPTRP00000020836	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1B	POLR1E	ENSPTRP00000071178	ENSPTRP00000081004	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase I subunit E.	0.998
POLR1B	RRN3	ENSPTRP00000071178	ENSPTRP00000013308	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RRN3 homolog, RNA polymerase I transcription factor.	0.969
POLR1B	TAF1A	ENSPTRP00000071178	ENSPTRP00000003364	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.674
POLR1B	TAF1D	ENSPTRP00000071178	ENSPTRP00000054254	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.604
POLR1B	UBTF	ENSPTRP00000071178	ENSPTRP00000075608	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Upstream binding transcription factor, RNA polymerase I.	0.864