STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL18A1Collagen type XVIII alpha 1 chain. (1754 aa)    
Predicted Functional Partners:
COL15A1
COL15A1 isoform 2.
     
0.907
CK820_G0044543
COL23A1 isoform 1.
    
0.866
MMP2
Matrix metallopeptidase 2.
   
 0.863
NCL
NCL isoform 2.
    
 
 0.817
MMP9
Matrix metallopeptidase 9.
   
 0.801
GPC1
GPC1 isoform 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 
 0.748
DR1
Down-regulator of transcription 1, TBP-binding (Negative cofactor 2).
      
 0.740
KDR
Kinase insert domain receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
    
 
 0.728
HSPG2
HSPG2 isoform 1.
   
 
 0.705
THBS1
Thrombospondin 1.
   
 0.690
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.