STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX1LIM/homeobox protein Lhx1; Potential transcription factor. May play a role in early mesoderm formation and later in lateral mesoderm differentiation and neurogenesis (By similarity). (406 aa)    
Predicted Functional Partners:
LDB2
LIM domain binding 2.
    
 0.771
CK820_G0026078
SSBP4 isoform 2.
    
 
 0.733
SSBP4
SSBP4 isoform 11.
    
 
 0.733
CCNK
CCNK isoform 2; Belongs to the cyclin family.
    
   0.714
LOC107969428
Single stranded DNA binding protein 4.
    
 
 0.711
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.677
LOC737148
Single-stranded DNA-binding protein 3 pseudogene.
    
 
 0.677
ENSPTRP00000085013
annotation not available
    
 
 0.677
ENSPTRP00000086171
annotation not available
    
 
 0.677
ENSPTRP00000087502
annotation not available
    
 
 0.677
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.