TBP protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

Experiments

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[Homology]

Score

TBP

TBP isoform 1. (336 aa)

Predicted Functional Partners:

GTF2B

0.999

TAF1

0.994

TAF2

0.992

TAF3

0.991

TBPL2

0.991

TAF6

0.991

TAF12

0.990

TAF10

0.990

TAF5

0.990

TAF8

0.990

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTF2B	TAF1	ENSPTRP00000001610	ENSPTRP00000090345	General transcription factor IIB.	Transcription initiation factor TFIID subunit.	0.962
GTF2B	TAF10	ENSPTRP00000001610	ENSPTRP00000060099	General transcription factor IIB.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.940
GTF2B	TAF12	ENSPTRP00000001610	ENSPTRP00000000760	General transcription factor IIB.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa.	0.952
GTF2B	TAF2	ENSPTRP00000001610	ENSPTRP00000053071	General transcription factor IIB.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa.	0.939
GTF2B	TAF3	ENSPTRP00000001610	ENSPTRP00000003857	General transcription factor IIB.	TATA-box binding protein associated factor 3.	0.906
GTF2B	TAF5	ENSPTRP00000001610	ENSPTRP00000064092	General transcription factor IIB.	TATA-box binding protein associated factor 5.	0.876
GTF2B	TAF6	ENSPTRP00000001610	ENSPTRP00000063219	General transcription factor IIB.	TATA-box binding protein associated factor 6.	0.939
GTF2B	TAF8	ENSPTRP00000001610	ENSPTRP00000088250	General transcription factor IIB.	TATA-box binding protein associated factor 8.	0.915
GTF2B	TBP	ENSPTRP00000001610	ENSPTRP00000058203	General transcription factor IIB.	TBP isoform 1.	0.999
GTF2B	TBPL2	ENSPTRP00000001610	ENSPTRP00000010815	General transcription factor IIB.	TATA box-binding protein-like protein 2; Transcription factor required in complex with TAF3 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process (By similarity).	0.993
TAF1	GTF2B	ENSPTRP00000090345	ENSPTRP00000001610	Transcription initiation factor TFIID subunit.	General transcription factor IIB.	0.962
TAF1	TAF10	ENSPTRP00000090345	ENSPTRP00000060099	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
TAF1	TAF12	ENSPTRP00000090345	ENSPTRP00000000760	Transcription initiation factor TFIID subunit.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa.	0.993
TAF1	TAF2	ENSPTRP00000090345	ENSPTRP00000053071	Transcription initiation factor TFIID subunit.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa.	0.999
TAF1	TAF3	ENSPTRP00000090345	ENSPTRP00000003857	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 3.	0.999
TAF1	TAF5	ENSPTRP00000090345	ENSPTRP00000064092	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 5.	0.993
TAF1	TAF6	ENSPTRP00000090345	ENSPTRP00000063219	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 6.	0.995
TAF1	TAF8	ENSPTRP00000090345	ENSPTRP00000088250	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 8.	0.997
TAF1	TBP	ENSPTRP00000090345	ENSPTRP00000058203	Transcription initiation factor TFIID subunit.	TBP isoform 1.	0.994
TAF1	TBPL2	ENSPTRP00000090345	ENSPTRP00000010815	Transcription initiation factor TFIID subunit.	TATA box-binding protein-like protein 2; Transcription factor required in complex with TAF3 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process (By similarity).	0.923