PATL2 protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCP1A	DCP2	ENSPTRP00000092316	ENSPTRP00000088791	DCP1 decapping enzyme homolog A.	DCP2 decapping enzyme homolog.	0.998
DCP1A	EDC3	ENSPTRP00000092316	ENSPTRP00000012459	DCP1 decapping enzyme homolog A.	Enhancer of mRNA decapping 3 homolog.	0.997
DCP1A	EDC4	ENSPTRP00000092316	ENSPTRP00000042027	DCP1 decapping enzyme homolog A.	Enhancer of mRNA decapping 4.	0.997
DCP1A	LSM1	ENSPTRP00000092316	ENSPTRP00000053200	DCP1 decapping enzyme homolog A.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.789
DCP1A	LSM2	ENSPTRP00000092316	ENSPTRP00000030701	DCP1 decapping enzyme homolog A.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.799
DCP1A	LSM4	ENSPTRP00000092316	ENSPTRP00000091603	DCP1 decapping enzyme homolog A.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.868
DCP1A	LSM6	ENSPTRP00000092316	ENSPTRP00000028301	DCP1 decapping enzyme homolog A.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.552
DCP1A	LSM7	ENSPTRP00000092316	ENSPTRP00000017394	DCP1 decapping enzyme homolog A.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.665
DCP1A	PATL2	ENSPTRP00000092316	ENSPTRP00000061085	DCP1 decapping enzyme homolog A.	Protein PAT1 homolog 2 isoform X2.	0.844
DCP1A	XRN1	ENSPTRP00000092316	ENSPTRP00000026654	DCP1 decapping enzyme homolog A.	5'-3' exoribonuclease 1.	0.992
DCP2	DCP1A	ENSPTRP00000088791	ENSPTRP00000092316	DCP2 decapping enzyme homolog.	DCP1 decapping enzyme homolog A.	0.998
DCP2	EDC3	ENSPTRP00000088791	ENSPTRP00000012459	DCP2 decapping enzyme homolog.	Enhancer of mRNA decapping 3 homolog.	0.998
DCP2	EDC4	ENSPTRP00000088791	ENSPTRP00000042027	DCP2 decapping enzyme homolog.	Enhancer of mRNA decapping 4.	0.998
DCP2	LSM1	ENSPTRP00000088791	ENSPTRP00000053200	DCP2 decapping enzyme homolog.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.938
DCP2	LSM2	ENSPTRP00000088791	ENSPTRP00000030701	DCP2 decapping enzyme homolog.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.905
DCP2	LSM4	ENSPTRP00000088791	ENSPTRP00000091603	DCP2 decapping enzyme homolog.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.961
DCP2	LSM6	ENSPTRP00000088791	ENSPTRP00000028301	DCP2 decapping enzyme homolog.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.740
DCP2	LSM7	ENSPTRP00000088791	ENSPTRP00000017394	DCP2 decapping enzyme homolog.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.826
DCP2	PATL2	ENSPTRP00000088791	ENSPTRP00000061085	DCP2 decapping enzyme homolog.	Protein PAT1 homolog 2 isoform X2.	0.843
DCP2	XRN1	ENSPTRP00000088791	ENSPTRP00000026654	DCP2 decapping enzyme homolog.	5'-3' exoribonuclease 1.	0.996