GPBP1 protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT1	CNOT2	ENSPTRP00000013973	ENSPTRP00000057878	CCR4-NOT transcription complex, subunit 1.	CCR4-NOT transcription complex, subunit 2.	0.998
CNOT1	GPBP1	ENSPTRP00000013973	ENSPTRP00000066431	CCR4-NOT transcription complex, subunit 1.	GC-rich promoter binding protein 1.	0.502
CNOT2	CNOT1	ENSPTRP00000057878	ENSPTRP00000013973	CCR4-NOT transcription complex, subunit 2.	CCR4-NOT transcription complex, subunit 1.	0.998
CNOT2	GPBP1	ENSPTRP00000057878	ENSPTRP00000066431	CCR4-NOT transcription complex, subunit 2.	GC-rich promoter binding protein 1.	0.544
CYTB	GPBP1	ENSPTRP00000061405	ENSPTRP00000066431	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis.	GC-rich promoter binding protein 1.	0.501
CYTB	ND2	ENSPTRP00000061405	ENSPTRP00000061406	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis.	NADH-ubiquinone oxidoreductase chain 2; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).	0.999
CYTB	NNT	ENSPTRP00000061405	ENSPTRP00000028875	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis.	Nicotinamide nucleotide transhydrogenase.	0.527
DRG2	EAPP	ENSPTRP00000015076	ENSPTRP00000010610	Developmentally regulated GTP binding protein 2.	E2F-associated phosphoprotein.	0.587
DRG2	GPBP1	ENSPTRP00000015076	ENSPTRP00000066431	Developmentally regulated GTP binding protein 2.	GC-rich promoter binding protein 1.	0.487
EAPP	DRG2	ENSPTRP00000010610	ENSPTRP00000015076	E2F-associated phosphoprotein.	Developmentally regulated GTP binding protein 2.	0.587
EAPP	GPBP1	ENSPTRP00000010610	ENSPTRP00000066431	E2F-associated phosphoprotein.	GC-rich promoter binding protein 1.	0.495
FNDC11	GPBP1	ENSPTRP00000023667	ENSPTRP00000066431	Fibronectin type III domain containing 11.	GC-rich promoter binding protein 1.	0.794
GPBP1	CNOT1	ENSPTRP00000066431	ENSPTRP00000013973	GC-rich promoter binding protein 1.	CCR4-NOT transcription complex, subunit 1.	0.502
GPBP1	CNOT2	ENSPTRP00000066431	ENSPTRP00000057878	GC-rich promoter binding protein 1.	CCR4-NOT transcription complex, subunit 2.	0.544
GPBP1	CYTB	ENSPTRP00000066431	ENSPTRP00000061405	GC-rich promoter binding protein 1.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis.	0.501
GPBP1	DRG2	ENSPTRP00000066431	ENSPTRP00000015076	GC-rich promoter binding protein 1.	Developmentally regulated GTP binding protein 2.	0.487
GPBP1	EAPP	ENSPTRP00000066431	ENSPTRP00000010610	GC-rich promoter binding protein 1.	E2F-associated phosphoprotein.	0.495
GPBP1	FNDC11	ENSPTRP00000066431	ENSPTRP00000023667	GC-rich promoter binding protein 1.	Fibronectin type III domain containing 11.	0.794
GPBP1	ND2	ENSPTRP00000066431	ENSPTRP00000061406	GC-rich promoter binding protein 1.	NADH-ubiquinone oxidoreductase chain 2; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).	0.495
GPBP1	NNT	ENSPTRP00000066431	ENSPTRP00000028875	GC-rich promoter binding protein 1.	Nicotinamide nucleotide transhydrogenase.	0.550