CHD4 protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHD3	CHD4	ENSPTRP00000014854	ENSPTRP00000083768	Chromodomain helicase DNA binding protein 3.	Chromodomain helicase DNA binding protein 4.	0.996
CHD3	CHD5	ENSPTRP00000014854	ENSPTRP00000074300	Chromodomain helicase DNA binding protein 3.	Chromodomain helicase DNA binding protein 5.	0.987
CHD3	ENSPTRP00000082945	ENSPTRP00000014854	ENSPTRP00000082945	Chromodomain helicase DNA binding protein 3.	annotation not available	0.939
CHD3	GATAD2A	ENSPTRP00000014854	ENSPTRP00000018322	Chromodomain helicase DNA binding protein 3.	GATA zinc finger domain containing 2A.	0.939
CHD3	GATAD2B	ENSPTRP00000014854	ENSPTRP00000002295	Chromodomain helicase DNA binding protein 3.	GATAD2B isoform 3.	0.981
CHD3	HDAC1	ENSPTRP00000014854	ENSPTRP00000075891	Chromodomain helicase DNA binding protein 3.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.938
CHD3	HDAC2	ENSPTRP00000014854	ENSPTRP00000049696	Chromodomain helicase DNA binding protein 3.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.976
CHD3	LOC748850	ENSPTRP00000014854	ENSPTRP00000067224	Chromodomain helicase DNA binding protein 3.	HDAC2 isoform 9.	0.951
CHD3	MTA2	ENSPTRP00000014854	ENSPTRP00000064969	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1 family, member 2.	0.930
CHD3	MTA3	ENSPTRP00000014854	ENSPTRP00000089558	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1 family member 3.	0.951
CHD4	CHD3	ENSPTRP00000083768	ENSPTRP00000014854	Chromodomain helicase DNA binding protein 4.	Chromodomain helicase DNA binding protein 3.	0.996
CHD4	CHD5	ENSPTRP00000083768	ENSPTRP00000074300	Chromodomain helicase DNA binding protein 4.	Chromodomain helicase DNA binding protein 5.	0.998
CHD4	ENSPTRP00000082945	ENSPTRP00000083768	ENSPTRP00000082945	Chromodomain helicase DNA binding protein 4.	annotation not available	0.991
CHD4	GATAD2A	ENSPTRP00000083768	ENSPTRP00000018322	Chromodomain helicase DNA binding protein 4.	GATA zinc finger domain containing 2A.	0.991
CHD4	GATAD2B	ENSPTRP00000083768	ENSPTRP00000002295	Chromodomain helicase DNA binding protein 4.	GATAD2B isoform 3.	0.996
CHD4	HDAC1	ENSPTRP00000083768	ENSPTRP00000075891	Chromodomain helicase DNA binding protein 4.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.993
CHD4	HDAC2	ENSPTRP00000083768	ENSPTRP00000049696	Chromodomain helicase DNA binding protein 4.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.997
CHD4	LOC748850	ENSPTRP00000083768	ENSPTRP00000067224	Chromodomain helicase DNA binding protein 4.	HDAC2 isoform 9.	0.993
CHD4	MTA2	ENSPTRP00000083768	ENSPTRP00000064969	Chromodomain helicase DNA binding protein 4.	Metastasis associated 1 family, member 2.	0.993
CHD4	MTA3	ENSPTRP00000083768	ENSPTRP00000089558	Chromodomain helicase DNA binding protein 4.	Metastasis associated 1 family member 3.	0.995