H3F3B protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3F3B

H3 histone family member 3B. (136 aa)

Predicted Functional Partners:

KDM1B

0.936

GLYR1

0.917

ATRX

0.915

H3C13

0.906

LOC746430

0.906

LOC107966300

0.906

DAXX

0.894

H3-4

0.889

LOC112209457-4

0.888

LOC471875

0.888

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATRX	DAXX	ENSPTRP00000087577	ENSPTRP00000030818	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	Death domain associated protein.	0.999
ATRX	H3-4	ENSPTRP00000087577	ENSPTRP00000002098	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	HIST3H3 isoform 1.	0.953
ATRX	H3C13	ENSPTRP00000087577	ENSPTRP00000048353	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	HIST2H3A isoform 1.	0.837
ATRX	H3F3B	ENSPTRP00000087577	ENSPTRP00000085765	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	H3 histone family member 3B.	0.915
ATRX	LOC107966300	ENSPTRP00000087577	ENSPTRP00000078706	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	Histone H3.	0.837
ATRX	LOC112209457-4	ENSPTRP00000087577	ENSPTRP00000074291	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	Histone H3.1.	0.888
ATRX	LOC471875	ENSPTRP00000087577	ENSPTRP00000091510	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	Histone H3.1-like.	0.888
ATRX	LOC746430	ENSPTRP00000087577	ENSPTRP00000075885	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	Uncharacterized LOC746430.	0.837
DAXX	ATRX	ENSPTRP00000030818	ENSPTRP00000087577	Death domain associated protein.	Transcriptional regulator ATRX; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes. Catalytic component of the chromatin remodeling complex ATRX:DAXX which has ATP-dependent DNA translocase a [...]	0.999
DAXX	H3-4	ENSPTRP00000030818	ENSPTRP00000002098	Death domain associated protein.	HIST3H3 isoform 1.	0.697
DAXX	H3C13	ENSPTRP00000030818	ENSPTRP00000048353	Death domain associated protein.	HIST2H3A isoform 1.	0.779
DAXX	H3F3B	ENSPTRP00000030818	ENSPTRP00000085765	Death domain associated protein.	H3 histone family member 3B.	0.894
DAXX	LOC107966300	ENSPTRP00000030818	ENSPTRP00000078706	Death domain associated protein.	Histone H3.	0.779
DAXX	LOC112209457-4	ENSPTRP00000030818	ENSPTRP00000074291	Death domain associated protein.	Histone H3.1.	0.575
DAXX	LOC471875	ENSPTRP00000030818	ENSPTRP00000091510	Death domain associated protein.	Histone H3.1-like.	0.575
DAXX	LOC746430	ENSPTRP00000030818	ENSPTRP00000075885	Death domain associated protein.	Uncharacterized LOC746430.	0.779
GLYR1	H3C13	ENSPTRP00000083605	ENSPTRP00000048353	Glyoxylate reductase 1 homolog.	HIST2H3A isoform 1.	0.917
GLYR1	H3F3B	ENSPTRP00000083605	ENSPTRP00000085765	Glyoxylate reductase 1 homolog.	H3 histone family member 3B.	0.917
GLYR1	KDM1B	ENSPTRP00000083605	ENSPTRP00000030324	Glyoxylate reductase 1 homolog.	KDM1B isoform 4.	0.908
GLYR1	LOC107966300	ENSPTRP00000083605	ENSPTRP00000078706	Glyoxylate reductase 1 homolog.	Histone H3.	0.917