Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL11A1COL11A1 isoform 4. (1573 aa)    
Predicted Functional Partners:
COL2A1
Collagen type II alpha 1 chain.
  
0.893
COL5A2
Collagen type V alpha 2 chain.
  
0.872
COL16A1
COL16A1 isoform 1.
   
 0.744
CR201_G0052020
COL6A2 isoform 4.
   
 0.712
COL11A2
COL11A2 isoform 2.
   
 
 0.708
COL1A2
COL1A2 isoform 1.
  
0.664
COL3A1
COL3A1 isoform 2.
  
 
0.642
COL1A1
COL1A1 isoform 2.
  
0.637
COL27A1
COL27A1 isoform 1.
  
 
0.613
THBS2
THBS2 isoform 1.
   
 0.602
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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