Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAVER2RAVER2 isoform 1. (417 aa)    
Predicted Functional Partners:
PTBP2
Polypyrimidine tract binding protein 2.
   
 0.763
CNOT11
CCR4-NOT transcription complex subunit 11.
   
   0.744
PTBP1
PTBP1 isoform 4.
   
 0.724
CNOT10
CNOT10 isoform 1.
   
   0.709
GADD45B
GADD45B isoform 5.
    
   0.702
SRSF4
SRSF4 isoform 3.
   
 0.701
SRSF6
SRSF6 isoform 1.
   
 0.679
CHERP
CHERP isoform 1.
   
    0.652
PTBP3
PTBP3 isoform 3.
   
 0.636
ZDHHC16
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.634
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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