Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FOXD3FOXD3 isoform 1. (478 aa)    
Predicted Functional Partners:
PAX3
PAX3 isoform 1.
    
 0.853
RFX1
RFX1 isoform 3.
    
 
 0.787
MYB
MYB isoform 11.
    
 0.750
SLC45A1
Solute carrier family 45 member 1.
    
 
 0.736
NF1
NF1 isoform 6.
   
 
 0.724
DUS1L
Dihydrouridine synthase 1 like.
   
   0.716
CARMIL2
CARMIL2 isoform 1.
    
   0.711
SNAI2
Snail family transcriptional repressor 2.
   
 
 0.701
SOX9
SRY-box transcription factor 9.
   
 0.691
HOXC4
HOXC4 isoform 1.
    
 0.640
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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