Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSBP3SSBP3 isoform 5. (341 aa)    
Predicted Functional Partners:
SSBP2
Single stranded DNA binding protein 2.
   
   0.925
CR201_G0037373
SSBP4 isoform 8.
   
   0.840
SSBP4
SSBP4 isoform 2.
   
   0.840
LHX1
LHX1 isoform 1.
    
 
 0.757
LHX9
LHX9 isoform 1.
    
 
 0.754
LMO4
LIM domain only 4.
    
 
 0.745
ISL2
ISL LIM homeobox 2.
    
 
 0.744
ISL1
ISL1 isoform 1.
    
 
 0.744
LMX1B
LMX1B isoform 4.
    
 
 0.742
LHX6
LHX6 isoform 4.
    
   0.736
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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