Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF1Protein YIPF1; Belongs to the YIP1 family. (306 aa)    
Predicted Functional Partners:
YIPF6
Protein YIPF.
   
 
 0.910
YIPF4
Protein YIPF.
   
 
 0.763
FBXO32
FBXO32 isoform 2.
      
 0.726
YIPF5
Protein YIPF5; Plays a role in transport between endoplasmic reticulum and Golgi.
   
 
 0.696
TRIM63
TRIM63 isoform 2.
      
 0.630
SELENOS
SELENOS isoform 1.
   
 
 0.621
YIPF3
YIPF3 isoform 1.
   
  
 0.543
TMED2
Transmembrane p24 trafficking protein 2.
   
 
 0.542
TVP23A
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.526
CDRT4
CDRT4 isoform 3.
   
 
 0.526
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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