SVBP protein (Pongo abelii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SVBP

Small vasohibin binding protein. (66 aa)

Predicted Functional Partners:

VASH1

0.990

VASH2

0.975

TUBA1B

0.803

BCS1L

0.560

TTL

0.551

TUBB3

0.457

LARGE2

0.444

B4GAT1

0.444

GXYLT1

0.444

LARGE1

0.444

Your Current Organism:

Pongo abelii

NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4GAT1	LARGE1	ENSPPYP00000004686	ENSPPYP00000013115	Beta-1,4-glucuronyltransferase 1; Beta-1,4-glucuronyltransferase involved in O-mannosylation of alpha-dystroglycan (DAG1). Transfers a glucuronic acid (GlcA) residue onto a xylose (Xyl) acceptor to produce the glucuronyl-beta-1,4-xylose- beta disaccharide primer, which is further elongated by LARGE1, during synthesis of phosphorylated O-mannosyl glycan. Phosphorylated O- mannosyl glycan is a carbohydrate is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G- like domain-containing extracellular proteins with high affinity. Required fo [...]	LARGE xylosyl- and glucuronyltransferase 1.	0.991
B4GAT1	LARGE2	ENSPPYP00000004686	ENSPPYP00000003819	Beta-1,4-glucuronyltransferase 1; Beta-1,4-glucuronyltransferase involved in O-mannosylation of alpha-dystroglycan (DAG1). Transfers a glucuronic acid (GlcA) residue onto a xylose (Xyl) acceptor to produce the glucuronyl-beta-1,4-xylose- beta disaccharide primer, which is further elongated by LARGE1, during synthesis of phosphorylated O-mannosyl glycan. Phosphorylated O- mannosyl glycan is a carbohydrate is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G- like domain-containing extracellular proteins with high affinity. Required fo [...]	LARGE2 isoform 1.	0.992
B4GAT1	SVBP	ENSPPYP00000004686	ENSPPYP00000001692	Beta-1,4-glucuronyltransferase 1; Beta-1,4-glucuronyltransferase involved in O-mannosylation of alpha-dystroglycan (DAG1). Transfers a glucuronic acid (GlcA) residue onto a xylose (Xyl) acceptor to produce the glucuronyl-beta-1,4-xylose- beta disaccharide primer, which is further elongated by LARGE1, during synthesis of phosphorylated O-mannosyl glycan. Phosphorylated O- mannosyl glycan is a carbohydrate is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G- like domain-containing extracellular proteins with high affinity. Required fo [...]	Small vasohibin binding protein.	0.444
BCS1L	SVBP	ENSPPYP00000014727	ENSPPYP00000001692	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone; Belongs to the AAA ATPase family.	Small vasohibin binding protein.	0.560
GXYLT1	SVBP	ENSPPYP00000005044	ENSPPYP00000001692	Uncharacterized protein.	Small vasohibin binding protein.	0.444
LARGE1	B4GAT1	ENSPPYP00000013115	ENSPPYP00000004686	LARGE xylosyl- and glucuronyltransferase 1.	Beta-1,4-glucuronyltransferase 1; Beta-1,4-glucuronyltransferase involved in O-mannosylation of alpha-dystroglycan (DAG1). Transfers a glucuronic acid (GlcA) residue onto a xylose (Xyl) acceptor to produce the glucuronyl-beta-1,4-xylose- beta disaccharide primer, which is further elongated by LARGE1, during synthesis of phosphorylated O-mannosyl glycan. Phosphorylated O- mannosyl glycan is a carbohydrate is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G- like domain-containing extracellular proteins with high affinity. Required fo [...]	0.991
LARGE1	LARGE2	ENSPPYP00000013115	ENSPPYP00000003819	LARGE xylosyl- and glucuronyltransferase 1.	LARGE2 isoform 1.	0.901
LARGE1	SVBP	ENSPPYP00000013115	ENSPPYP00000001692	LARGE xylosyl- and glucuronyltransferase 1.	Small vasohibin binding protein.	0.444
LARGE2	B4GAT1	ENSPPYP00000003819	ENSPPYP00000004686	LARGE2 isoform 1.	Beta-1,4-glucuronyltransferase 1; Beta-1,4-glucuronyltransferase involved in O-mannosylation of alpha-dystroglycan (DAG1). Transfers a glucuronic acid (GlcA) residue onto a xylose (Xyl) acceptor to produce the glucuronyl-beta-1,4-xylose- beta disaccharide primer, which is further elongated by LARGE1, during synthesis of phosphorylated O-mannosyl glycan. Phosphorylated O- mannosyl glycan is a carbohydrate is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G- like domain-containing extracellular proteins with high affinity. Required fo [...]	0.992
LARGE2	LARGE1	ENSPPYP00000003819	ENSPPYP00000013115	LARGE2 isoform 1.	LARGE xylosyl- and glucuronyltransferase 1.	0.901
LARGE2	SVBP	ENSPPYP00000003819	ENSPPYP00000001692	LARGE2 isoform 1.	Small vasohibin binding protein.	0.444
SVBP	B4GAT1	ENSPPYP00000001692	ENSPPYP00000004686	Small vasohibin binding protein.	Beta-1,4-glucuronyltransferase 1; Beta-1,4-glucuronyltransferase involved in O-mannosylation of alpha-dystroglycan (DAG1). Transfers a glucuronic acid (GlcA) residue onto a xylose (Xyl) acceptor to produce the glucuronyl-beta-1,4-xylose- beta disaccharide primer, which is further elongated by LARGE1, during synthesis of phosphorylated O-mannosyl glycan. Phosphorylated O- mannosyl glycan is a carbohydrate is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G- like domain-containing extracellular proteins with high affinity. Required fo [...]	0.444
SVBP	BCS1L	ENSPPYP00000001692	ENSPPYP00000014727	Small vasohibin binding protein.	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone; Belongs to the AAA ATPase family.	0.560
SVBP	GXYLT1	ENSPPYP00000001692	ENSPPYP00000005044	Small vasohibin binding protein.	Uncharacterized protein.	0.444
SVBP	LARGE1	ENSPPYP00000001692	ENSPPYP00000013115	Small vasohibin binding protein.	LARGE xylosyl- and glucuronyltransferase 1.	0.444
SVBP	LARGE2	ENSPPYP00000001692	ENSPPYP00000003819	Small vasohibin binding protein.	LARGE2 isoform 1.	0.444
SVBP	TTL	ENSPPYP00000001692	ENSPPYP00000013565	Small vasohibin binding protein.	Tubulin tyrosine ligase.	0.551
SVBP	TUBA1B	ENSPPYP00000001692	ENSPPYP00000024744	Small vasohibin binding protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.803
SVBP	TUBB3	ENSPPYP00000001692	ENSPPYP00000008654	Small vasohibin binding protein.	T0170152 isoform 1; Belongs to the tubulin family.	0.457
SVBP	VASH1	ENSPPYP00000001692	ENSPPYP00000006839	Small vasohibin binding protein.	VASH1 isoform 1.	0.990