Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIN28ALIN28A isoform 1. (209 aa)    
Predicted Functional Partners:
TUT4
ZCCHC11 isoform 3.
    
 0.873
SOX2
SRY-box transcription factor 2.
    
 0.868
POU5F1
POU domain protein.
   
 0.861
TUT7
ZCCHC6 isoform 2.
    
 0.857
RPL26
T0168903 isoform 1.
   
 
 0.786
ENSPPYP00000023554
annotation not available
   
 
 0.786
EBNA1BP2
EBNA1BP2 isoform 8.
   
   0.782
UPF1
UPF1 isoform 2.
    
 
 0.777
KLF4
Kruppel like factor 4.
    
 0.775
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
 0.772
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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