Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSRP1-2RSRP1 isoform 11. (290 aa)    
Predicted Functional Partners:
CLK2
CLK2 isoform 3; Belongs to the protein kinase superfamily.
   
 
 0.803
CR201_G0028807
CLK3 isoform 6.
   
 
 0.800
PSME3IP1
Family with sequence similarity 192 member A.
    
   0.695
SRSF5
Serine and arginine rich splicing factor 5.
   
  
 0.619
CLK1
CLK1 isoform 3; Belongs to the protein kinase superfamily.
   
 
 0.600
RHCE
RHD isoform 1; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.531
TMEM50A
TMEM50A isoform 1.
      
 0.531
SYF2
SYF2 pre-mRNA splicing factor.
      
 0.531
MACO1
TMEM57 isoform 1.
      
 0.523
CLK4
CDC like kinase 4; Belongs to the protein kinase superfamily.
   
 
 0.518
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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