Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CR201_G0030121SFTPA1 isoform 2. (248 aa)    
Predicted Functional Partners:
CR201_G0030124
SFTPA2 isoform 3.
  
  
 
0.900
SFTPB
SFTPB isoform 2.
   
 
 0.895
SFTPC
SFTPC isoform 5.
   
 
 0.824
SFTPD
Surfactant protein D.
   
 0.717
AGER
AGER isoform 1.
   
 
 0.590
SCGB3A2
SCGB3A2 isoform 4.
   
  
 0.576
SCGB1A1
SCGB1A1 isoform 2.
   
  
 0.559
CKAP4
CKAP4 isoform 3.
    
 0.542
ENSPPYP00000002671
LOW QUALITY PROTEIN: mannose-binding protein A-like.
   
 0.513
TNR
TNR isoform 1.
    
  0.446
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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