Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRAV38-1T cell receptor alpha variable 38-1. (116 aa)    
Predicted Functional Partners:
TRAV22
T cell receptor alpha variable 22.
  
 0.738
ENSPPYP00000006385
annotation not available
  
  
  0.572
TRAV10
T cell receptor alpha variable 10.
  
  
 0.568
TRAV30
T cell receptor alpha variable 30.
  
  
  0.549
TRAV40
T cell receptor alpha variable 40.
  
  
  0.527
TRAV39
T cell receptor alpha variable 39.
  
  
  0.508
CD247
CD247 isoform 2.
   
 
 0.506
CR201_G0032832
TRAV27 isoform 1.
  
  
  0.501
TRDV3
T cell receptor delta variable 3.
  
  
0.496
CR201_G0032742
TRAC isoform 1.
 
 
  0.491
Your Current Organism:
Pongo abelii
NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan
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