Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPSF1 | CPSF2 | ENSPPYP00000021278 | ENSPPYP00000023779 | CPSF1 isoform 3. | Cleavage and polyadenylation specificity factor subunit 2. | 0.996 |
CPSF1 | CPSF3 | ENSPPYP00000021278 | ENSPPYP00000014140 | CPSF1 isoform 3. | CPSF3 isoform 1. | 0.999 |
CPSF1 | CPSF4 | ENSPPYP00000021278 | ENSPPYP00000019472 | CPSF1 isoform 3. | CPSF4 isoform 5. | 0.999 |
CPSF1 | CPSF6 | ENSPPYP00000021278 | ENSPPYP00000005418 | CPSF1 isoform 3. | Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.915 |
CPSF1 | CPSF7 | ENSPPYP00000021278 | ENSPPYP00000003678 | CPSF1 isoform 3. | CPSF7 isoform 16. | 0.937 |
CPSF1 | CSTF2 | ENSPPYP00000021278 | ENSPPYP00000022995 | CPSF1 isoform 3. | Cleavage stimulation factor subunit 2; One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. This subunit is directly involved in the binding to pre-mRNAs (By similarity). | 0.992 |
CPSF1 | FIP1L1 | ENSPPYP00000021278 | ENSPPYP00000016499 | CPSF1 isoform 3. | Pre-mRNA 3'-end-processing factor FIP1; Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex (By similarity). | 0.997 |
CPSF1 | NUDT21 | ENSPPYP00000021278 | ENSPPYP00000008319 | CPSF1 isoform 3. | Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.924 |
CPSF1 | YTHDC2 | ENSPPYP00000021278 | ENSPPYP00000017549 | CPSF1 isoform 3. | 3'-5' RNA helicase YTHDC2; 3'-5' RNA helicase that plays a key role in the male and female germline by promoting transition from mitotic to meiotic divisions in stem cells. Specifically recognizes and binds N6- methyladenosine (m6A)-containing RNAs, a modification present at internal sites of mRNAs and some non-coding RNAs that plays a role in the efficiency of RNA processing and stability. Essential for ensuring a successful progression of the meiotic program in the germline by regulating the level of m6A-containing RNAs. Acts by binding and promoting degradation of m6A-containing mRN [...] | 0.796 |
CPSF2 | CPSF1 | ENSPPYP00000023779 | ENSPPYP00000021278 | Cleavage and polyadenylation specificity factor subunit 2. | CPSF1 isoform 3. | 0.996 |
CPSF2 | CPSF3 | ENSPPYP00000023779 | ENSPPYP00000014140 | Cleavage and polyadenylation specificity factor subunit 2. | CPSF3 isoform 1. | 0.999 |
CPSF2 | CPSF4 | ENSPPYP00000023779 | ENSPPYP00000019472 | Cleavage and polyadenylation specificity factor subunit 2. | CPSF4 isoform 5. | 0.981 |
CPSF2 | CPSF6 | ENSPPYP00000023779 | ENSPPYP00000005418 | Cleavage and polyadenylation specificity factor subunit 2. | Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.888 |
CPSF2 | CPSF7 | ENSPPYP00000023779 | ENSPPYP00000003678 | Cleavage and polyadenylation specificity factor subunit 2. | CPSF7 isoform 16. | 0.897 |
CPSF2 | CSTF2 | ENSPPYP00000023779 | ENSPPYP00000022995 | Cleavage and polyadenylation specificity factor subunit 2. | Cleavage stimulation factor subunit 2; One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. This subunit is directly involved in the binding to pre-mRNAs (By similarity). | 0.933 |
CPSF2 | EIF4A3 | ENSPPYP00000023779 | ENSPPYP00000009779 | Cleavage and polyadenylation specificity factor subunit 2. | Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. | 0.590 |
CPSF2 | FIP1L1 | ENSPPYP00000023779 | ENSPPYP00000016499 | Cleavage and polyadenylation specificity factor subunit 2. | Pre-mRNA 3'-end-processing factor FIP1; Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex (By similarity). | 0.994 |
CPSF2 | NUDT21 | ENSPPYP00000023779 | ENSPPYP00000008319 | Cleavage and polyadenylation specificity factor subunit 2. | Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.925 |
CPSF2 | YTHDC2 | ENSPPYP00000023779 | ENSPPYP00000017549 | Cleavage and polyadenylation specificity factor subunit 2. | 3'-5' RNA helicase YTHDC2; 3'-5' RNA helicase that plays a key role in the male and female germline by promoting transition from mitotic to meiotic divisions in stem cells. Specifically recognizes and binds N6- methyladenosine (m6A)-containing RNAs, a modification present at internal sites of mRNAs and some non-coding RNAs that plays a role in the efficiency of RNA processing and stability. Essential for ensuring a successful progression of the meiotic program in the germline by regulating the level of m6A-containing RNAs. Acts by binding and promoting degradation of m6A-containing mRN [...] | 0.816 |
CPSF3 | CPSF1 | ENSPPYP00000014140 | ENSPPYP00000021278 | CPSF3 isoform 1. | CPSF1 isoform 3. | 0.999 |
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