KRI1 protein (Pongo abelii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRI1

KRI1 isoform 1. (623 aa)

Predicted Functional Partners:

KRR1

0.977

NOP14

0.853

ESF1

0.849

DDX27

0.832

UTP3

0.829

UTP14A

0.824

NGDN

0.816

LTV1

0.814

CEBPZ

0.811

UTP23

0.808

Your Current Organism:

Pongo abelii

NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPZ	DDX27	ENSPPYP00000013950	ENSPPYP00000012417	CCAAT enhancer binding protein zeta.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.901
CEBPZ	ESF1	ENSPPYP00000013950	ENSPPYP00000011980	CCAAT enhancer binding protein zeta.	ESF1 nucleolar pre-rRNA processing protein homolog.	0.902
CEBPZ	KRI1	ENSPPYP00000013950	ENSPPYP00000010719	CCAAT enhancer binding protein zeta.	KRI1 isoform 1.	0.811
CEBPZ	KRR1	ENSPPYP00000013950	ENSPPYP00000005452	CCAAT enhancer binding protein zeta.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.881
CEBPZ	LTV1	ENSPPYP00000013950	ENSPPYP00000019109	CCAAT enhancer binding protein zeta.	Protein LTV1 homolog; Belongs to the LTV1 family.	0.808
CEBPZ	NGDN	ENSPPYP00000013950	ENSPPYP00000023851	CCAAT enhancer binding protein zeta.	NGDN isoform 2.	0.778
CEBPZ	NOP14	ENSPPYP00000013950	ENSPPYP00000016258	CCAAT enhancer binding protein zeta.	NOP14 nucleolar protein.	0.918
CEBPZ	UTP14A	ENSPPYP00000013950	ENSPPYP00000023184	CCAAT enhancer binding protein zeta.	UTP14A isoform 2.	0.921
CEBPZ	UTP23	ENSPPYP00000013950	ENSPPYP00000021127	CCAAT enhancer binding protein zeta.	UTP23 small subunit processome component.	0.570
CEBPZ	UTP3	ENSPPYP00000013950	ENSPPYP00000016538	CCAAT enhancer binding protein zeta.	UTP3 isoform 1.	0.815
DDX27	CEBPZ	ENSPPYP00000012417	ENSPPYP00000013950	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	CCAAT enhancer binding protein zeta.	0.901
DDX27	ESF1	ENSPPYP00000012417	ENSPPYP00000011980	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	ESF1 nucleolar pre-rRNA processing protein homolog.	0.818
DDX27	KRI1	ENSPPYP00000012417	ENSPPYP00000010719	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	KRI1 isoform 1.	0.832
DDX27	KRR1	ENSPPYP00000012417	ENSPPYP00000005452	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.900
DDX27	LTV1	ENSPPYP00000012417	ENSPPYP00000019109	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Protein LTV1 homolog; Belongs to the LTV1 family.	0.703
DDX27	NGDN	ENSPPYP00000012417	ENSPPYP00000023851	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	NGDN isoform 2.	0.624
DDX27	NOP14	ENSPPYP00000012417	ENSPPYP00000016258	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	NOP14 nucleolar protein.	0.924
DDX27	UTP14A	ENSPPYP00000012417	ENSPPYP00000023184	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	UTP14A isoform 2.	0.946
DDX27	UTP23	ENSPPYP00000012417	ENSPPYP00000021127	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	UTP23 small subunit processome component.	0.560
DDX27	UTP3	ENSPPYP00000012417	ENSPPYP00000016538	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	UTP3 isoform 1.	0.828