CR201_G0052008 protein (Pongo abelii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pongo abelii

NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ART1	CR201_G0052008	ENSPPYP00000004155	ENSPPYP00000012865	NAD(P)(+)--arginine ADP-ribosyltransferase.	PCBP3 isoform 2.	0.623
CR201_G0052008	ART1	ENSPPYP00000012865	ENSPPYP00000004155	PCBP3 isoform 2.	NAD(P)(+)--arginine ADP-ribosyltransferase.	0.623
CR201_G0052008	ENSPPYP00000015235	ENSPPYP00000012865	ENSPPYP00000015235	PCBP3 isoform 2.	annotation not available	0.658
CR201_G0052008	ENSPPYP00000017597	ENSPPYP00000012865	ENSPPYP00000017597	PCBP3 isoform 2.	annotation not available	0.658
CR201_G0052008	HNRNPA2B1	ENSPPYP00000012865	ENSPPYP00000019858	PCBP3 isoform 2.	Heterogeneous nuclear ribonucleoproteins A2/B1; Heterogeneous nuclear ribonucleoprotein (hnRNP) that associates with nascent pre-mRNAs, packaging them into hnRNP particles. The hnRNP particle arrangement on nascent hnRNA is non-random and sequence-dependent and serves to condense and stabilize the transcripts and minimize tangling and knotting. Packaging plays a role in various processes such as transcription, pre-mRNA processing, RNA nuclear export, subcellular location, mRNA translation and stability of mature mRNAs. Forms hnRNP particles with at least 20 other different hnRNP and he [...]	0.602
CR201_G0052008	HNRNPK	ENSPPYP00000012865	ENSPPYP00000021658	PCBP3 isoform 2.	Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...]	0.658
CR201_G0052008	NCBP1	ENSPPYP00000012865	ENSPPYP00000021769	PCBP3 isoform 2.	Nuclear cap binding protein subunit 1.	0.629
CR201_G0052008	PCBP1	ENSPPYP00000012865	ENSPPYP00000013749	PCBP3 isoform 2.	Poly(rC) binding protein 1.	0.962
CR201_G0052008	PCBP2	ENSPPYP00000012865	ENSPPYP00000005224	PCBP3 isoform 2.	Poly(rC) binding protein 2.	0.993
CR201_G0052008	RBM11	ENSPPYP00000012865	ENSPPYP00000012605	PCBP3 isoform 2.	RBM11 isoform 5.	0.671
CR201_G0052008	YBEY	ENSPPYP00000012865	ENSPPYP00000024371	PCBP3 isoform 2.	YBEY isoform 10.	0.628
ENSPPYP00000015235	CR201_G0052008	ENSPPYP00000015235	ENSPPYP00000012865	annotation not available	PCBP3 isoform 2.	0.658
ENSPPYP00000015235	HNRNPA2B1	ENSPPYP00000015235	ENSPPYP00000019858	annotation not available	Heterogeneous nuclear ribonucleoproteins A2/B1; Heterogeneous nuclear ribonucleoprotein (hnRNP) that associates with nascent pre-mRNAs, packaging them into hnRNP particles. The hnRNP particle arrangement on nascent hnRNA is non-random and sequence-dependent and serves to condense and stabilize the transcripts and minimize tangling and knotting. Packaging plays a role in various processes such as transcription, pre-mRNA processing, RNA nuclear export, subcellular location, mRNA translation and stability of mature mRNAs. Forms hnRNP particles with at least 20 other different hnRNP and he [...]	0.974
ENSPPYP00000015235	HNRNPK	ENSPPYP00000015235	ENSPPYP00000021658	annotation not available	Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...]	0.900
ENSPPYP00000015235	NCBP1	ENSPPYP00000015235	ENSPPYP00000021769	annotation not available	Nuclear cap binding protein subunit 1.	0.482
ENSPPYP00000015235	PCBP1	ENSPPYP00000015235	ENSPPYP00000013749	annotation not available	Poly(rC) binding protein 1.	0.929
ENSPPYP00000015235	PCBP2	ENSPPYP00000015235	ENSPPYP00000005224	annotation not available	Poly(rC) binding protein 2.	0.915
ENSPPYP00000017597	CR201_G0052008	ENSPPYP00000017597	ENSPPYP00000012865	annotation not available	PCBP3 isoform 2.	0.658
ENSPPYP00000017597	HNRNPA2B1	ENSPPYP00000017597	ENSPPYP00000019858	annotation not available	Heterogeneous nuclear ribonucleoproteins A2/B1; Heterogeneous nuclear ribonucleoprotein (hnRNP) that associates with nascent pre-mRNAs, packaging them into hnRNP particles. The hnRNP particle arrangement on nascent hnRNA is non-random and sequence-dependent and serves to condense and stabilize the transcripts and minimize tangling and knotting. Packaging plays a role in various processes such as transcription, pre-mRNA processing, RNA nuclear export, subcellular location, mRNA translation and stability of mature mRNAs. Forms hnRNP particles with at least 20 other different hnRNP and he [...]	0.974
ENSPPYP00000017597	NCBP1	ENSPPYP00000017597	ENSPPYP00000021769	annotation not available	Nuclear cap binding protein subunit 1.	0.482