SLC1A4 protein (Pongo abelii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC1A4

Solute carrier family 1 member 4. (532 aa)

Predicted Functional Partners:

SLC7A5

0.516

SLC3A2

0.510

DIPK2A

0.499

SLC7A10

0.490

SLC38A2

0.460

SLC7A6

0.459

SLC7A1

0.458

SLC45A2

0.457

SLC38A1

0.440

CR201_G0031976

0.434

Your Current Organism:

Pongo abelii

NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CR201_G0031976	SLC1A4	ENSPPYP00000013228	ENSPPYP00000013785	MCHR1 isoform 3.	Solute carrier family 1 member 4.	0.434
DIPK2A	SLC1A4	ENSPPYP00000015862	ENSPPYP00000013785	Divergent protein kinase domain 2A.	Solute carrier family 1 member 4.	0.499
SLC1A4	CR201_G0031976	ENSPPYP00000013785	ENSPPYP00000013228	Solute carrier family 1 member 4.	MCHR1 isoform 3.	0.434
SLC1A4	DIPK2A	ENSPPYP00000013785	ENSPPYP00000015862	Solute carrier family 1 member 4.	Divergent protein kinase domain 2A.	0.499
SLC1A4	SLC38A1	ENSPPYP00000013785	ENSPPYP00000005062	Solute carrier family 1 member 4.	Sodium-coupled neutral amino acid transporter 1; Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA (By similarity).	0.440
SLC1A4	SLC38A2	ENSPPYP00000013785	ENSPPYP00000005063	Solute carrier family 1 member 4.	Solute carrier family 38 member 2.	0.460
SLC1A4	SLC3A2	ENSPPYP00000013785	ENSPPYP00000003628	Solute carrier family 1 member 4.	Solute carrier family 3 member 2.	0.510
SLC1A4	SLC45A2	ENSPPYP00000013785	ENSPPYP00000017184	Solute carrier family 1 member 4.	SLC45A2 isoform 1.	0.457
SLC1A4	SLC7A1	ENSPPYP00000013785	ENSPPYP00000005979	Solute carrier family 1 member 4.	Solute carrier family 7 member 1.	0.458
SLC1A4	SLC7A10	ENSPPYP00000013785	ENSPPYP00000011004	Solute carrier family 1 member 4.	SLC7A10 isoform 1.	0.490
SLC1A4	SLC7A5	ENSPPYP00000013785	ENSPPYP00000008611	Solute carrier family 1 member 4.	Solute carrier family 7 member 5.	0.516
SLC1A4	SLC7A6	ENSPPYP00000013785	ENSPPYP00000008455	Solute carrier family 1 member 4.	SLC7A6 isoform 2.	0.459
SLC38A1	SLC1A4	ENSPPYP00000005062	ENSPPYP00000013785	Sodium-coupled neutral amino acid transporter 1; Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA (By similarity).	Solute carrier family 1 member 4.	0.440
SLC38A1	SLC38A2	ENSPPYP00000005062	ENSPPYP00000005063	Sodium-coupled neutral amino acid transporter 1; Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA (By similarity).	Solute carrier family 38 member 2.	0.902
SLC38A1	SLC3A2	ENSPPYP00000005062	ENSPPYP00000003628	Sodium-coupled neutral amino acid transporter 1; Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA (By similarity).	Solute carrier family 3 member 2.	0.457
SLC38A1	SLC7A5	ENSPPYP00000005062	ENSPPYP00000008611	Sodium-coupled neutral amino acid transporter 1; Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA (By similarity).	Solute carrier family 7 member 5.	0.558
SLC38A1	SLC7A6	ENSPPYP00000005062	ENSPPYP00000008455	Sodium-coupled neutral amino acid transporter 1; Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA (By similarity).	SLC7A6 isoform 2.	0.447
SLC38A2	SLC1A4	ENSPPYP00000005063	ENSPPYP00000013785	Solute carrier family 38 member 2.	Solute carrier family 1 member 4.	0.460
SLC38A2	SLC38A1	ENSPPYP00000005063	ENSPPYP00000005062	Solute carrier family 38 member 2.	Sodium-coupled neutral amino acid transporter 1; Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA (By similarity).	0.902
SLC38A2	SLC3A2	ENSPPYP00000005063	ENSPPYP00000003628	Solute carrier family 38 member 2.	Solute carrier family 3 member 2.	0.515