GORASP2 protein (Pongo abelii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GORASP2

GORASP2 isoform 1. (410 aa)

Predicted Functional Partners:

BLZF1

0.996

GOLGA2

0.961

GORASP1

0.927

LAMP1

0.909

MAP1LC3B

0.909

LAMP2

0.908

GABARAPL2

0.907

GABARAP

0.906

MAP1LC3C

0.906

MAP1LC3A

0.906

Your Current Organism:

Pongo abelii

NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BLZF1	GORASP1	ENSPPYP00000000620	ENSPPYP00000015660	BLZF1 isoform 1.	GORASP1 isoform 1.	0.962
BLZF1	GORASP2	ENSPPYP00000000620	ENSPPYP00000014426	BLZF1 isoform 1.	GORASP2 isoform 1.	0.996
GABARAP	GABARAPL2	ENSPPYP00000008889	ENSPPYP00000008538	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	GABA type A receptor associated protein like 2.	0.987
GABARAP	GORASP1	ENSPPYP00000008889	ENSPPYP00000015660	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	GORASP1 isoform 1.	0.906
GABARAP	GORASP2	ENSPPYP00000008889	ENSPPYP00000014426	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	GORASP2 isoform 1.	0.906
GABARAP	MAP1LC3A	ENSPPYP00000008889	ENSPPYP00000012214	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	Microtubule associated protein 1 light chain 3 alpha.	0.609
GABARAP	MAP1LC3B	ENSPPYP00000008889	ENSPPYP00000008605	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	MAP1LC3B isoform 1.	0.631
GABARAP	MAP1LC3C	ENSPPYP00000008889	ENSPPYP00000011926	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	MAP1LC3C isoform 1.	0.513
GABARAPL2	GABARAP	ENSPPYP00000008538	ENSPPYP00000008889	GABA type A receptor associated protein like 2.	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	0.987
GABARAPL2	GORASP1	ENSPPYP00000008538	ENSPPYP00000015660	GABA type A receptor associated protein like 2.	GORASP1 isoform 1.	0.906
GABARAPL2	GORASP2	ENSPPYP00000008538	ENSPPYP00000014426	GABA type A receptor associated protein like 2.	GORASP2 isoform 1.	0.907
GABARAPL2	MAP1LC3A	ENSPPYP00000008538	ENSPPYP00000012214	GABA type A receptor associated protein like 2.	Microtubule associated protein 1 light chain 3 alpha.	0.854
GABARAPL2	MAP1LC3B	ENSPPYP00000008538	ENSPPYP00000008605	GABA type A receptor associated protein like 2.	MAP1LC3B isoform 1.	0.885
GABARAPL2	MAP1LC3C	ENSPPYP00000008538	ENSPPYP00000011926	GABA type A receptor associated protein like 2.	MAP1LC3C isoform 1.	0.478
GOLGA2	GORASP1	ENSPPYP00000022017	ENSPPYP00000015660	GOLGA2 isoform 2.	GORASP1 isoform 1.	0.993
GOLGA2	GORASP2	ENSPPYP00000022017	ENSPPYP00000014426	GOLGA2 isoform 2.	GORASP2 isoform 1.	0.961
GORASP1	BLZF1	ENSPPYP00000015660	ENSPPYP00000000620	GORASP1 isoform 1.	BLZF1 isoform 1.	0.962
GORASP1	GABARAP	ENSPPYP00000015660	ENSPPYP00000008889	GORASP1 isoform 1.	Gamma-aminobutyric acid receptor-associated protein-like 1; Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity); Belongs to the ATG8 family.	0.906
GORASP1	GABARAPL2	ENSPPYP00000015660	ENSPPYP00000008538	GORASP1 isoform 1.	GABA type A receptor associated protein like 2.	0.906
GORASP1	GOLGA2	ENSPPYP00000015660	ENSPPYP00000022017	GORASP1 isoform 1.	GOLGA2 isoform 2.	0.993