PSMB8 protein (Pongo abelii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PSMB8

Proteasome subunit beta. (272 aa)

Predicted Functional Partners:

PSMB9

0.997

PSMB4

0.987

PSMB3

0.985

PSMB2

0.983

PSMA3

0.983

PSMB10

0.982

PSMA5

0.981

PSMB6

0.979

PSMA6

0.979

PSMB7

0.977

Your Current Organism:

Pongo abelii

NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSMA3	PSMA5	ENSPPYP00000006652	ENSPPYP00000024692	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA3	PSMA6	ENSPPYP00000006652	ENSPPYP00000024301	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.998
PSMA3	PSMB10	ENSPPYP00000006652	ENSPPYP00000008443	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA3	PSMB2	ENSPPYP00000006652	ENSPPYP00000001793	Proteasome subunit alpha type.	Proteasome subunit beta.	0.998
PSMA3	PSMB3	ENSPPYP00000006652	ENSPPYP00000009557	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA3	PSMB4	ENSPPYP00000006652	ENSPPYP00000001012	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
PSMA3	PSMB6	ENSPPYP00000006652	ENSPPYP00000008832	Proteasome subunit alpha type.	Proteasome subunit beta.	0.995
PSMA3	PSMB7	ENSPPYP00000006652	ENSPPYP00000021958	Proteasome subunit alpha type.	Proteasome subunit beta.	0.994
PSMA3	PSMB8	ENSPPYP00000006652	ENSPPYP00000019303	Proteasome subunit alpha type.	Proteasome subunit beta.	0.983
PSMA3	PSMB9	ENSPPYP00000006652	ENSPPYP00000019305	Proteasome subunit alpha type.	Proteasome subunit beta.	0.996
PSMA5	PSMA3	ENSPPYP00000024692	ENSPPYP00000006652	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA5	PSMA6	ENSPPYP00000024692	ENSPPYP00000024301	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.997
PSMA5	PSMB10	ENSPPYP00000024692	ENSPPYP00000008443	Proteasome subunit alpha type.	Proteasome subunit beta.	0.993
PSMA5	PSMB2	ENSPPYP00000024692	ENSPPYP00000001793	Proteasome subunit alpha type.	Proteasome subunit beta.	0.998
PSMA5	PSMB3	ENSPPYP00000024692	ENSPPYP00000009557	Proteasome subunit alpha type.	Proteasome subunit beta.	0.998
PSMA5	PSMB4	ENSPPYP00000024692	ENSPPYP00000001012	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.998
PSMA5	PSMB6	ENSPPYP00000024692	ENSPPYP00000008832	Proteasome subunit alpha type.	Proteasome subunit beta.	0.995
PSMA5	PSMB7	ENSPPYP00000024692	ENSPPYP00000021958	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA5	PSMB8	ENSPPYP00000024692	ENSPPYP00000019303	Proteasome subunit alpha type.	Proteasome subunit beta.	0.981
PSMA5	PSMB9	ENSPPYP00000024692	ENSPPYP00000019305	Proteasome subunit alpha type.	Proteasome subunit beta.	0.994