LHX2 protein (Pongo abelii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LHX2

LHX2 isoform 2. (406 aa)

Predicted Functional Partners:

LDB1

0.819

LDB2

0.791

GATA5

0.677

EBF3

0.620

MAB21L1

0.605

SSBP3

0.604

CR201_G0021063

0.604

ENSPPYP00000022339

0.604

LMO1

0.584

LMO3

0.584

Your Current Organism:

Pongo abelii

NCBI taxonomy Id: 9601
Other names: Orang-utan, Orangutan, P. abelii, Pongo pygmaeus abeli, Pongo pygmaeus abelii, Sumatran orangutan, orang utan

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CR201_G0021063	LDB1	ENSPPYP00000014225	ENSPPYP00000003016	SSBP3 isoform 8.	LIM domain binding 1.	0.649
CR201_G0021063	LDB2	ENSPPYP00000014225	ENSPPYP00000016337	SSBP3 isoform 8.	LDB2 isoform 1.	0.526
CR201_G0021063	LHX2	ENSPPYP00000014225	ENSPPYP00000021954	SSBP3 isoform 8.	LHX2 isoform 2.	0.604
EBF3	LHX2	ENSPPYP00000003231	ENSPPYP00000021954	EBF3 isoform 2.	LHX2 isoform 2.	0.620
ENSPPYP00000022339	LDB1	ENSPPYP00000022339	ENSPPYP00000003016	annotation not available	LIM domain binding 1.	0.649
ENSPPYP00000022339	LDB2	ENSPPYP00000022339	ENSPPYP00000016337	annotation not available	LDB2 isoform 1.	0.526
ENSPPYP00000022339	LHX2	ENSPPYP00000022339	ENSPPYP00000021954	annotation not available	LHX2 isoform 2.	0.604
GATA5	LDB1	ENSPPYP00000012523	ENSPPYP00000003016	GATA binding protein 5.	LIM domain binding 1.	0.488
GATA5	LDB2	ENSPPYP00000012523	ENSPPYP00000016337	GATA binding protein 5.	LDB2 isoform 1.	0.505
GATA5	LHX2	ENSPPYP00000012523	ENSPPYP00000021954	GATA binding protein 5.	LHX2 isoform 2.	0.677
GATA5	LMO1	ENSPPYP00000012523	ENSPPYP00000004025	GATA binding protein 5.	LMO1 isoform 3.	0.500
GATA5	LMO3	ENSPPYP00000012523	ENSPPYP00000004954	GATA binding protein 5.	LIM domain only protein 3.	0.500
GATA5	MAB21L1	ENSPPYP00000012523	ENSPPYP00000006007	GATA binding protein 5.	MAB21L1 isoform 1.	0.606
LDB1	CR201_G0021063	ENSPPYP00000003016	ENSPPYP00000014225	LIM domain binding 1.	SSBP3 isoform 8.	0.649
LDB1	ENSPPYP00000022339	ENSPPYP00000003016	ENSPPYP00000022339	LIM domain binding 1.	annotation not available	0.649
LDB1	GATA5	ENSPPYP00000003016	ENSPPYP00000012523	LIM domain binding 1.	GATA binding protein 5.	0.488
LDB1	LDB2	ENSPPYP00000003016	ENSPPYP00000016337	LIM domain binding 1.	LDB2 isoform 1.	0.677
LDB1	LHX2	ENSPPYP00000003016	ENSPPYP00000021954	LIM domain binding 1.	LHX2 isoform 2.	0.819
LDB1	LMO1	ENSPPYP00000003016	ENSPPYP00000004025	LIM domain binding 1.	LMO1 isoform 3.	0.840
LDB1	LMO3	ENSPPYP00000003016	ENSPPYP00000004954	LIM domain binding 1.	LIM domain only protein 3.	0.840