CCDC140 protein (human) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Homo sapiens

NCBI taxonomy Id: 9606
Other names: H. sapiens, human, man

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C10orf55	C3orf36	ENSP00000409225	ENSP00000386219	Uncharacterized protein C10orf55; Chromosome 10 open reading frame 55.	Uncharacterized protein C3orf36.	0.511
C10orf55	CCDC140	ENSP00000409225	ENSP00000295226	Uncharacterized protein C10orf55; Chromosome 10 open reading frame 55.	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	0.423
C3orf36	C10orf55	ENSP00000386219	ENSP00000409225	Uncharacterized protein C3orf36.	Uncharacterized protein C10orf55; Chromosome 10 open reading frame 55.	0.511
C3orf36	C8orf86	ENSP00000386219	ENSP00000350856	Uncharacterized protein C3orf36.	Uncharacterized protein C8orf86; Chromosome 8 open reading frame 86.	0.491
C3orf36	CCDC140	ENSP00000386219	ENSP00000295226	Uncharacterized protein C3orf36.	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	0.522
C8orf86	C3orf36	ENSP00000350856	ENSP00000386219	Uncharacterized protein C8orf86; Chromosome 8 open reading frame 86.	Uncharacterized protein C3orf36.	0.491
C8orf86	CCDC140	ENSP00000350856	ENSP00000295226	Uncharacterized protein C8orf86; Chromosome 8 open reading frame 86.	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	0.430
CCDC140	C10orf55	ENSP00000295226	ENSP00000409225	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	Uncharacterized protein C10orf55; Chromosome 10 open reading frame 55.	0.423
CCDC140	C3orf36	ENSP00000295226	ENSP00000386219	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	Uncharacterized protein C3orf36.	0.522
CCDC140	C8orf86	ENSP00000295226	ENSP00000350856	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	Uncharacterized protein C8orf86; Chromosome 8 open reading frame 86.	0.430
CCDC140	LRRC74B	ENSP00000295226	ENSP00000394078	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	Leucine-rich repeat-containing protein 74B; Leucine rich repeat containing 74B.	0.470
CCDC140	PAX3	ENSP00000295226	ENSP00000375921	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	Paired box protein Pax-3; Transcription factor that may regulate cell proliferation, migration and apoptosis. Involved in neural development and myogenesis. Transcriptional activator of MITF, acting synergistically with SOX10 ; Belongs to the paired homeobox family.	0.422
CCDC140	RGS13	ENSP00000295226	ENSP00000442837	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	Regulator of G-protein signaling 13; Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to both G(i)-alpha and G(q)-alpha (By similarity).	0.633
CCDC140	RPL26	ENSP00000295226	ENSP00000463784	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	60S ribosomal protein L26; Component of the large ribosomal subunit.	0.811
CCDC140	RPL26L1	ENSP00000295226	ENSP00000428223	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	Ribosomal protein L26 like 1; Belongs to the universal ribosomal protein uL24 family.	0.811
CCDC140	RPL3	ENSP00000295226	ENSP00000346001	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	60S ribosomal protein L3; The L3 protein is a component of the large subunit of cytoplasmic ribosomes.	0.811
LRRC74B	CCDC140	ENSP00000394078	ENSP00000295226	Leucine-rich repeat-containing protein 74B; Leucine rich repeat containing 74B.	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	0.470
PAX3	CCDC140	ENSP00000375921	ENSP00000295226	Paired box protein Pax-3; Transcription factor that may regulate cell proliferation, migration and apoptosis. Involved in neural development and myogenesis. Transcriptional activator of MITF, acting synergistically with SOX10 ; Belongs to the paired homeobox family.	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	0.422
RGS13	CCDC140	ENSP00000442837	ENSP00000295226	Regulator of G-protein signaling 13; Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to both G(i)-alpha and G(q)-alpha (By similarity).	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	0.633
RPL26	CCDC140	ENSP00000463784	ENSP00000295226	60S ribosomal protein L26; Component of the large ribosomal subunit.	Coiled-coil domain-containing protein 140; CCDC140 long non-coding RNA.	0.811