C19orf18 protein (human) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Homo sapiens

NCBI taxonomy Id: 9606
Other names: H. sapiens, human, man

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBOF1	C16orf96	ENSP00000377577	ENSP00000415027	Basal body-orientation factor 1; Basal body protein required in multiciliate cells to align and maintain cilia orientation in response to flow. May act by mediating a maturation step that stabilizes and aligns cilia orientation. Not required to respond to planar cell polarity (PCP) or flow-based orientation cues (By similarity); Belongs to the BBOF1 family.	Uncharacterized protein C16orf96; Chromosome 16 open reading frame 96.	0.410
BBOF1	C19orf18	ENSP00000377577	ENSP00000321519	Basal body-orientation factor 1; Basal body protein required in multiciliate cells to align and maintain cilia orientation in response to flow. May act by mediating a maturation step that stabilizes and aligns cilia orientation. Not required to respond to planar cell polarity (PCP) or flow-based orientation cues (By similarity); Belongs to the BBOF1 family.	Uncharacterized protein C19orf18; Chromosome 19 open reading frame 18.	0.406
BBOF1	C20orf144	ENSP00000377577	ENSP00000364370	Basal body-orientation factor 1; Basal body protein required in multiciliate cells to align and maintain cilia orientation in response to flow. May act by mediating a maturation step that stabilizes and aligns cilia orientation. Not required to respond to planar cell polarity (PCP) or flow-based orientation cues (By similarity); Belongs to the BBOF1 family.	Uncharacterized protein C20orf144; Chromosome 20 open reading frame 144.	0.455
C11orf52	C19orf18	ENSP00000278601	ENSP00000321519	Uncharacterized protein C11orf52; Chromosome 11 open reading frame 52.	Uncharacterized protein C19orf18; Chromosome 19 open reading frame 18.	0.426
C11orf52	C22orf15	ENSP00000278601	ENSP00000305096	Uncharacterized protein C11orf52; Chromosome 11 open reading frame 52.	Uncharacterized protein C22orf15; Chromosome 22 open reading frame 15.	0.420
C16orf78	C16orf86	ENSP00000299191	ENSP00000384117	Uncharacterized protein C16orf78; Chromosome 16 open reading frame 78.	Uncharacterized protein C16orf86; Chromosome 16 open reading frame 86.	0.466
C16orf78	C16orf96	ENSP00000299191	ENSP00000415027	Uncharacterized protein C16orf78; Chromosome 16 open reading frame 78.	Uncharacterized protein C16orf96; Chromosome 16 open reading frame 96.	0.463
C16orf78	C19orf18	ENSP00000299191	ENSP00000321519	Uncharacterized protein C16orf78; Chromosome 16 open reading frame 78.	Uncharacterized protein C19orf18; Chromosome 19 open reading frame 18.	0.444
C16orf78	C20orf144	ENSP00000299191	ENSP00000364370	Uncharacterized protein C16orf78; Chromosome 16 open reading frame 78.	Uncharacterized protein C20orf144; Chromosome 20 open reading frame 144.	0.515
C16orf78	C22orf42	ENSP00000299191	ENSP00000371529	Uncharacterized protein C16orf78; Chromosome 16 open reading frame 78.	Uncharacterized protein C22orf42; Chromosome 22 open reading frame 42.	0.446
C16orf86	C16orf78	ENSP00000384117	ENSP00000299191	Uncharacterized protein C16orf86; Chromosome 16 open reading frame 86.	Uncharacterized protein C16orf78; Chromosome 16 open reading frame 78.	0.466
C16orf86	C16orf96	ENSP00000384117	ENSP00000415027	Uncharacterized protein C16orf86; Chromosome 16 open reading frame 86.	Uncharacterized protein C16orf96; Chromosome 16 open reading frame 96.	0.466
C16orf86	C19orf18	ENSP00000384117	ENSP00000321519	Uncharacterized protein C16orf86; Chromosome 16 open reading frame 86.	Uncharacterized protein C19orf18; Chromosome 19 open reading frame 18.	0.467
C16orf86	C20orf144	ENSP00000384117	ENSP00000364370	Uncharacterized protein C16orf86; Chromosome 16 open reading frame 86.	Uncharacterized protein C20orf144; Chromosome 20 open reading frame 144.	0.531
C16orf86	C22orf42	ENSP00000384117	ENSP00000371529	Uncharacterized protein C16orf86; Chromosome 16 open reading frame 86.	Uncharacterized protein C22orf42; Chromosome 22 open reading frame 42.	0.441
C16orf87	C19orf18	ENSP00000285697	ENSP00000321519	UPF0547 protein C16orf87; Chromosome 16 open reading frame 87; Belongs to the UPF0547 family.	Uncharacterized protein C19orf18; Chromosome 19 open reading frame 18.	0.423
C16orf87	C22orf15	ENSP00000285697	ENSP00000305096	UPF0547 protein C16orf87; Chromosome 16 open reading frame 87; Belongs to the UPF0547 family.	Uncharacterized protein C22orf15; Chromosome 22 open reading frame 15.	0.410
C16orf96	BBOF1	ENSP00000415027	ENSP00000377577	Uncharacterized protein C16orf96; Chromosome 16 open reading frame 96.	Basal body-orientation factor 1; Basal body protein required in multiciliate cells to align and maintain cilia orientation in response to flow. May act by mediating a maturation step that stabilizes and aligns cilia orientation. Not required to respond to planar cell polarity (PCP) or flow-based orientation cues (By similarity); Belongs to the BBOF1 family.	0.410
C16orf96	C16orf78	ENSP00000415027	ENSP00000299191	Uncharacterized protein C16orf96; Chromosome 16 open reading frame 96.	Uncharacterized protein C16orf78; Chromosome 16 open reading frame 78.	0.463
C16orf96	C16orf86	ENSP00000415027	ENSP00000384117	Uncharacterized protein C16orf96; Chromosome 16 open reading frame 96.	Uncharacterized protein C16orf86; Chromosome 16 open reading frame 86.	0.466