TMCO5A protein (human) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TMCO5A

Transmembrane and coiled-coil domains 5A; Belongs to the TMCO5 family. (288 aa)

Predicted Functional Partners:

FAM209A

0.705

TMEM225

0.648

C12orf40

0.637

C9orf43

0.616

TEX33

0.614

SPATA16

0.598

TMCO2

0.597

C9orf131

0.590

C20orf173

0.579

MAGEB16

0.566

Your Current Organism:

Homo sapiens

NCBI taxonomy Id: 9606
Other names: H. sapiens, human, man

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C12orf40	C9orf131	ENSP00000317671	ENSP00000308279	Uncharacterized protein C12orf40; Chromosome 12 open reading frame 40.	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	0.675
C12orf40	C9orf43	ENSP00000317671	ENSP00000288462	Uncharacterized protein C12orf40; Chromosome 12 open reading frame 40.	Uncharacterized protein C9orf43; Chromosome 9 open reading frame 43.	0.670
C12orf40	FAM209A	ENSP00000317671	ENSP00000360379	Uncharacterized protein C12orf40; Chromosome 12 open reading frame 40.	Protein FAM209A; Family with sequence similarity 209 member A.	0.626
C12orf40	MAGEB16	ENSP00000317671	ENSP00000382871	Uncharacterized protein C12orf40; Chromosome 12 open reading frame 40.	Melanoma-associated antigen B16; MAGE family member B16.	0.614
C12orf40	SPATA16	ENSP00000317671	ENSP00000341765	Uncharacterized protein C12orf40; Chromosome 12 open reading frame 40.	Spermatogenesis-associated protein 16; Involved in the formation of sperm acrosome, which implicated its potential role in spermatogenesis and sperm-egg fusion.	0.580
C12orf40	TMCO5A	ENSP00000317671	ENSP00000327234	Uncharacterized protein C12orf40; Chromosome 12 open reading frame 40.	Transmembrane and coiled-coil domains 5A; Belongs to the TMCO5 family.	0.637
C20orf173	C9orf131	ENSP00000403566	ENSP00000308279	Uncharacterized protein C20orf173; Chromosome 20 open reading frame 173.	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	0.638
C20orf173	FAM209A	ENSP00000403566	ENSP00000360379	Uncharacterized protein C20orf173; Chromosome 20 open reading frame 173.	Protein FAM209A; Family with sequence similarity 209 member A.	0.507
C20orf173	TEX33	ENSP00000403566	ENSP00000386118	Uncharacterized protein C20orf173; Chromosome 20 open reading frame 173.	Testis-expressed protein 33; Testis expressed 33.	0.513
C20orf173	TMCO2	ENSP00000403566	ENSP00000361852	Uncharacterized protein C20orf173; Chromosome 20 open reading frame 173.	Transmembrane and coiled-coil domains 2.	0.531
C20orf173	TMCO5A	ENSP00000403566	ENSP00000327234	Uncharacterized protein C20orf173; Chromosome 20 open reading frame 173.	Transmembrane and coiled-coil domains 5A; Belongs to the TMCO5 family.	0.579
C9orf131	C12orf40	ENSP00000308279	ENSP00000317671	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Uncharacterized protein C12orf40; Chromosome 12 open reading frame 40.	0.675
C9orf131	C20orf173	ENSP00000308279	ENSP00000403566	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Uncharacterized protein C20orf173; Chromosome 20 open reading frame 173.	0.638
C9orf131	C9orf43	ENSP00000308279	ENSP00000288462	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Uncharacterized protein C9orf43; Chromosome 9 open reading frame 43.	0.645
C9orf131	FAM209A	ENSP00000308279	ENSP00000360379	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Protein FAM209A; Family with sequence similarity 209 member A.	0.646
C9orf131	MAGEB16	ENSP00000308279	ENSP00000382871	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Melanoma-associated antigen B16; MAGE family member B16.	0.606
C9orf131	SPATA16	ENSP00000308279	ENSP00000341765	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Spermatogenesis-associated protein 16; Involved in the formation of sperm acrosome, which implicated its potential role in spermatogenesis and sperm-egg fusion.	0.603
C9orf131	TEX33	ENSP00000308279	ENSP00000386118	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Testis-expressed protein 33; Testis expressed 33.	0.440
C9orf131	TMCO2	ENSP00000308279	ENSP00000361852	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Transmembrane and coiled-coil domains 2.	0.482
C9orf131	TMCO5A	ENSP00000308279	ENSP00000327234	Uncharacterized protein C9orf131; Chromosome 9 open reading frame 131.	Transmembrane and coiled-coil domains 5A; Belongs to the TMCO5 family.	0.590