SMKR1 protein (human) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Homo sapiens

NCBI taxonomy Id: 9606
Other names: H. sapiens, human, man

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAU	RPL23	ENSP00000431822	ENSP00000420311	Ubiquitin-like protein FUBI; FAU ubiquitin like and ribosomal protein S30 fusion.	Ribosomal protein L23.	0.999
FAU	RPS18	ENSP00000431822	ENSP00000393241	Ubiquitin-like protein FUBI; FAU ubiquitin like and ribosomal protein S30 fusion.	40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.	0.999
FAU	SMKR1	ENSP00000431822	ENSP00000454370	Ubiquitin-like protein FUBI; FAU ubiquitin like and ribosomal protein S30 fusion.	Small lysine rich protein 1.	0.850
MRPL12	MRPL19	ENSP00000333837	ENSP00000377486	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Mitochondrial ribosomal protein L19.	0.999
MRPL12	MRPL20	ENSP00000333837	ENSP00000341082	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Mitochondrial ribosomal protein L20.	0.998
MRPL12	MRPL21	ENSP00000333837	ENSP00000354580	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Mitochondrial ribosomal protein L21.	0.996
MRPL12	MRPL27	ENSP00000333837	ENSP00000225969	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Mitochondrial ribosomal protein L27.	0.997
MRPL12	MRPL32	ENSP00000333837	ENSP00000223324	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Mitochondrial ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.999
MRPL12	PDCD11	ENSP00000333837	ENSP00000358812	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Protein RRP5 homolog; Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA.	0.904
MRPL12	RPL23	ENSP00000333837	ENSP00000420311	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Ribosomal protein L23.	0.987
MRPL12	RPS18	ENSP00000333837	ENSP00000393241	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.	0.974
MRPL12	SMKR1	ENSP00000333837	ENSP00000454370	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	Small lysine rich protein 1.	0.779
MRPL19	MRPL12	ENSP00000377486	ENSP00000333837	Mitochondrial ribosomal protein L19.	39S ribosomal protein L12, mitochondrial; Associates with mitochondrial RNA polymerase to activate transcription; Belongs to the bacterial ribosomal protein bL12 family.	0.999
MRPL19	MRPL20	ENSP00000377486	ENSP00000341082	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L20.	0.998
MRPL19	MRPL21	ENSP00000377486	ENSP00000354580	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L21.	0.998
MRPL19	MRPL27	ENSP00000377486	ENSP00000225969	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L27.	0.999
MRPL19	MRPL32	ENSP00000377486	ENSP00000223324	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.998
MRPL19	PDCD11	ENSP00000377486	ENSP00000358812	Mitochondrial ribosomal protein L19.	Protein RRP5 homolog; Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA.	0.968
MRPL19	RPL23	ENSP00000377486	ENSP00000420311	Mitochondrial ribosomal protein L19.	Ribosomal protein L23.	0.985
MRPL19	RPS18	ENSP00000377486	ENSP00000393241	Mitochondrial ribosomal protein L19.	40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.	0.984