Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DCLRE1C | LIG4 | ENSCAFP00000057589 | ENSCAFP00000009027 | DNA cross-link repair 1C. | DNA ligase. | 0.929 |
DCLRE1C | NHEJ1 | ENSCAFP00000057589 | ENSCAFP00000039487 | DNA cross-link repair 1C. | Non-homologous end joining factor 1. | 0.769 |
DCLRE1C | PRKDC | ENSCAFP00000057589 | ENSCAFP00000009842 | DNA cross-link repair 1C. | DNA-dependent protein kinase catalytic subunit; Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act [...] | 0.979 |
DCLRE1C | XRCC5 | ENSCAFP00000057589 | ENSCAFP00000038467 | DNA cross-link repair 1C. | X-ray repair cross complementing 5. | 0.970 |
DCLRE1C | XRCC6 | ENSCAFP00000057589 | ENSCAFP00000058107 | DNA cross-link repair 1C. | X-ray repair cross complementing 6. | 0.953 |
LIG4 | DCLRE1C | ENSCAFP00000009027 | ENSCAFP00000057589 | DNA ligase. | DNA cross-link repair 1C. | 0.929 |
LIG4 | NHEJ1 | ENSCAFP00000009027 | ENSCAFP00000039487 | DNA ligase. | Non-homologous end joining factor 1. | 0.987 |
LIG4 | PRKDC | ENSCAFP00000009027 | ENSCAFP00000009842 | DNA ligase. | DNA-dependent protein kinase catalytic subunit; Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act [...] | 0.963 |
LIG4 | TP53 | ENSCAFP00000009027 | ENSCAFP00000064590 | DNA ligase. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression. Its pro-apoptotic activity is activated via its intera [...] | 0.486 |
LIG4 | WRN | ENSCAFP00000009027 | ENSCAFP00000009638 | DNA ligase. | WRN RecQ like helicase. | 0.634 |
LIG4 | XRCC5 | ENSCAFP00000009027 | ENSCAFP00000038467 | DNA ligase. | X-ray repair cross complementing 5. | 0.985 |
LIG4 | XRCC6 | ENSCAFP00000009027 | ENSCAFP00000058107 | DNA ligase. | X-ray repair cross complementing 6. | 0.989 |
NHEJ1 | DCLRE1C | ENSCAFP00000039487 | ENSCAFP00000057589 | Non-homologous end joining factor 1. | DNA cross-link repair 1C. | 0.769 |
NHEJ1 | LIG4 | ENSCAFP00000039487 | ENSCAFP00000009027 | Non-homologous end joining factor 1. | DNA ligase. | 0.987 |
NHEJ1 | PRKDC | ENSCAFP00000039487 | ENSCAFP00000009842 | Non-homologous end joining factor 1. | DNA-dependent protein kinase catalytic subunit; Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act [...] | 0.971 |
NHEJ1 | XRCC5 | ENSCAFP00000039487 | ENSCAFP00000038467 | Non-homologous end joining factor 1. | X-ray repair cross complementing 5. | 0.976 |
NHEJ1 | XRCC6 | ENSCAFP00000039487 | ENSCAFP00000058107 | Non-homologous end joining factor 1. | X-ray repair cross complementing 6. | 0.928 |
PRKDC | DCLRE1C | ENSCAFP00000009842 | ENSCAFP00000057589 | DNA-dependent protein kinase catalytic subunit; Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act [...] | DNA cross-link repair 1C. | 0.979 |
PRKDC | LIG4 | ENSCAFP00000009842 | ENSCAFP00000009027 | DNA-dependent protein kinase catalytic subunit; Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act [...] | DNA ligase. | 0.963 |
PRKDC | NHEJ1 | ENSCAFP00000009842 | ENSCAFP00000039487 | DNA-dependent protein kinase catalytic subunit; Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act [...] | Non-homologous end joining factor 1. | 0.971 |
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