CABP4 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CABP4

Calcium binding protein 4. (277 aa)

Predicted Functional Partners:

CACNA1F

0.855

LRIT3

0.831

GPR152

0.826

DCP1B

0.820

PPP1R26

0.799

PITPNM1

0.744

IQCB1

0.738

PTRH1

0.731

RNF170

0.728

TOR2A

0.721

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CABP4	CACNA1F	ENSCAFP00000016971	ENSCAFP00000023378	Calcium binding protein 4.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.855
CABP4	DCP1B	ENSCAFP00000016971	ENSCAFP00000051137	Calcium binding protein 4.	Decapping mRNA 1B.	0.820
CABP4	GPR152	ENSCAFP00000016971	ENSCAFP00000016974	Calcium binding protein 4.	G protein-coupled receptor 152.	0.826
CABP4	IQCB1	ENSCAFP00000016971	ENSCAFP00000017123	Calcium binding protein 4.	IQ motif containing B1.	0.738
CABP4	LRIT3	ENSCAFP00000016971	ENSCAFP00000016927	Calcium binding protein 4.	Leucine rich repeat, Ig-like and transmembrane domains 3.	0.831
CABP4	PITPNM1	ENSCAFP00000016971	ENSCAFP00000016867	Calcium binding protein 4.	Phosphatidylinositol transfer protein membrane associated 1.	0.744
CABP4	PPP1R26	ENSCAFP00000016971	ENSCAFP00000029420	Calcium binding protein 4.	Protein phosphatase 1 regulatory subunit 26.	0.799
CABP4	PTRH1	ENSCAFP00000016971	ENSCAFP00000029825	Calcium binding protein 4.	Peptidyl-tRNA hydrolase 1 homolog.	0.731
CABP4	RNF170	ENSCAFP00000016971	ENSCAFP00000008078	Calcium binding protein 4.	Ring finger protein 170.	0.728
CABP4	TOR2A	ENSCAFP00000016971	ENSCAFP00000047238	Calcium binding protein 4.	Torsin.	0.721
CACNA1F	CABP4	ENSCAFP00000023378	ENSCAFP00000016971	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Calcium binding protein 4.	0.855
CACNA1F	DCP1B	ENSCAFP00000023378	ENSCAFP00000051137	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Decapping mRNA 1B.	0.817
CACNA1F	LRIT3	ENSCAFP00000023378	ENSCAFP00000016927	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Leucine rich repeat, Ig-like and transmembrane domains 3.	0.878
DCP1B	CABP4	ENSCAFP00000051137	ENSCAFP00000016971	Decapping mRNA 1B.	Calcium binding protein 4.	0.820
DCP1B	CACNA1F	ENSCAFP00000051137	ENSCAFP00000023378	Decapping mRNA 1B.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.817
DCP1B	LRIT3	ENSCAFP00000051137	ENSCAFP00000016927	Decapping mRNA 1B.	Leucine rich repeat, Ig-like and transmembrane domains 3.	0.687
GPR152	CABP4	ENSCAFP00000016974	ENSCAFP00000016971	G protein-coupled receptor 152.	Calcium binding protein 4.	0.826
GPR152	PITPNM1	ENSCAFP00000016974	ENSCAFP00000016867	G protein-coupled receptor 152.	Phosphatidylinositol transfer protein membrane associated 1.	0.824
GPR152	PPP1R26	ENSCAFP00000016974	ENSCAFP00000029420	G protein-coupled receptor 152.	Protein phosphatase 1 regulatory subunit 26.	0.880
GPR152	PTRH1	ENSCAFP00000016974	ENSCAFP00000029825	G protein-coupled receptor 152.	Peptidyl-tRNA hydrolase 1 homolog.	0.828