ZC4H2 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZC4H2

Zinc finger C4H2-type containing. (284 aa)

Predicted Functional Partners:

RNF220

0.942

OPHN1

0.814

OLFML2A

0.778

ACOT9

0.771

MFSD12

0.704

TMEM132E

0.702

GLRA4

0.689

TBX19

0.689

LAS1L

0.643

FAM155B

0.629

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACOT9	ZC4H2	ENSCAFP00000040400	ENSCAFP00000024353	Acyl-CoA thioesterase 9.	Zinc finger C4H2-type containing.	0.771
FAM155B	GLRA4	ENSCAFP00000024616	ENSCAFP00000026269	Family with sequence similarity 155 member B.	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.614
FAM155B	LAS1L	ENSCAFP00000024616	ENSCAFP00000057426	Family with sequence similarity 155 member B.	LAS1 like, ribosome biogenesis factor.	0.607
FAM155B	OLFML2A	ENSCAFP00000024616	ENSCAFP00000042081	Family with sequence similarity 155 member B.	Olfactomedin like 2A.	0.699
FAM155B	OPHN1	ENSCAFP00000024616	ENSCAFP00000024556	Family with sequence similarity 155 member B.	Oligophrenin 1.	0.591
FAM155B	TBX19	ENSCAFP00000024616	ENSCAFP00000065800	Family with sequence similarity 155 member B.	T-box transcription factor TBX19; Transcriptional regulator involved in developmental processes. Can activate POMC gene expression and repress the alpha glycoprotein subunit and thyroid-stimulating hormone beta promoters (By similarity).	0.610
FAM155B	ZC4H2	ENSCAFP00000024616	ENSCAFP00000024353	Family with sequence similarity 155 member B.	Zinc finger C4H2-type containing.	0.629
GLRA4	FAM155B	ENSCAFP00000026269	ENSCAFP00000024616	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Family with sequence similarity 155 member B.	0.614
GLRA4	LAS1L	ENSCAFP00000026269	ENSCAFP00000057426	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	LAS1 like, ribosome biogenesis factor.	0.609
GLRA4	OLFML2A	ENSCAFP00000026269	ENSCAFP00000042081	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Olfactomedin like 2A.	0.709
GLRA4	OPHN1	ENSCAFP00000026269	ENSCAFP00000024556	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Oligophrenin 1.	0.592
GLRA4	TBX19	ENSCAFP00000026269	ENSCAFP00000065800	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	T-box transcription factor TBX19; Transcriptional regulator involved in developmental processes. Can activate POMC gene expression and repress the alpha glycoprotein subunit and thyroid-stimulating hormone beta promoters (By similarity).	0.629
GLRA4	ZC4H2	ENSCAFP00000026269	ENSCAFP00000024353	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Zinc finger C4H2-type containing.	0.689
LAS1L	FAM155B	ENSCAFP00000057426	ENSCAFP00000024616	LAS1 like, ribosome biogenesis factor.	Family with sequence similarity 155 member B.	0.607
LAS1L	GLRA4	ENSCAFP00000057426	ENSCAFP00000026269	LAS1 like, ribosome biogenesis factor.	Glycine receptor alpha 4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.609
LAS1L	MFSD12	ENSCAFP00000057426	ENSCAFP00000028343	LAS1 like, ribosome biogenesis factor.	Major facilitator superfamily domain containing 12.	0.649
LAS1L	OLFML2A	ENSCAFP00000057426	ENSCAFP00000042081	LAS1 like, ribosome biogenesis factor.	Olfactomedin like 2A.	0.690
LAS1L	OPHN1	ENSCAFP00000057426	ENSCAFP00000024556	LAS1 like, ribosome biogenesis factor.	Oligophrenin 1.	0.591
LAS1L	TBX19	ENSCAFP00000057426	ENSCAFP00000065800	LAS1 like, ribosome biogenesis factor.	T-box transcription factor TBX19; Transcriptional regulator involved in developmental processes. Can activate POMC gene expression and repress the alpha glycoprotein subunit and thyroid-stimulating hormone beta promoters (By similarity).	0.604
LAS1L	TMEM132E	ENSCAFP00000057426	ENSCAFP00000039956	LAS1 like, ribosome biogenesis factor.	Transmembrane protein 132E.	0.622