SHISAL1 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHISAL1

Shisa like 1. (288 aa)

Predicted Functional Partners:

LLPH

0.640

SLC16A11

0.515

HEATR6

0.499

POLR1B

0.495

PGM5

0.493

SETBP1

0.483

CDX1

0.467

SYNPO

0.461

IGFLR1

0.457

DOCK8

0.457

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDX1	SHISAL1	ENSCAFP00000026906	ENSCAFP00000001246	Caudal type homeobox 1.	Shisa like 1.	0.467
DOCK8	SHISAL1	ENSCAFP00000060841	ENSCAFP00000001246	Dedicator of cytokinesis 8; Belongs to the DOCK family.	Shisa like 1.	0.457
HEATR6	SHISAL1	ENSCAFP00000026821	ENSCAFP00000001246	HEAT repeat containing 6.	Shisa like 1.	0.499
IGFLR1	SHISAL1	ENSCAFP00000010229	ENSCAFP00000001246	IGF like family receptor 1.	Shisa like 1.	0.457
LLPH	PGM5	ENSCAFP00000062351	ENSCAFP00000002837	LLP homolog, long-term synaptic facilitation factor.	Phosphoglucomutase 5; Belongs to the phosphohexose mutase family.	0.451
LLPH	POLR1B	ENSCAFP00000062351	ENSCAFP00000010651	LLP homolog, long-term synaptic facilitation factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.459
LLPH	SHISAL1	ENSCAFP00000062351	ENSCAFP00000001246	LLP homolog, long-term synaptic facilitation factor.	Shisa like 1.	0.640
LLPH	SLC16A11	ENSCAFP00000062351	ENSCAFP00000023507	LLP homolog, long-term synaptic facilitation factor.	Solute carrier family 16 member 11.	0.465
PGM5	LLPH	ENSCAFP00000002837	ENSCAFP00000062351	Phosphoglucomutase 5; Belongs to the phosphohexose mutase family.	LLP homolog, long-term synaptic facilitation factor.	0.451
PGM5	SHISAL1	ENSCAFP00000002837	ENSCAFP00000001246	Phosphoglucomutase 5; Belongs to the phosphohexose mutase family.	Shisa like 1.	0.493
POLR1B	LLPH	ENSCAFP00000010651	ENSCAFP00000062351	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	LLP homolog, long-term synaptic facilitation factor.	0.459
POLR1B	SHISAL1	ENSCAFP00000010651	ENSCAFP00000001246	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Shisa like 1.	0.495
SETBP1	SHISAL1	ENSCAFP00000026072	ENSCAFP00000001246	SET binding protein 1.	Shisa like 1.	0.483
SHISAL1	CDX1	ENSCAFP00000001246	ENSCAFP00000026906	Shisa like 1.	Caudal type homeobox 1.	0.467
SHISAL1	DOCK8	ENSCAFP00000001246	ENSCAFP00000060841	Shisa like 1.	Dedicator of cytokinesis 8; Belongs to the DOCK family.	0.457
SHISAL1	HEATR6	ENSCAFP00000001246	ENSCAFP00000026821	Shisa like 1.	HEAT repeat containing 6.	0.499
SHISAL1	IGFLR1	ENSCAFP00000001246	ENSCAFP00000010229	Shisa like 1.	IGF like family receptor 1.	0.457
SHISAL1	LLPH	ENSCAFP00000001246	ENSCAFP00000062351	Shisa like 1.	LLP homolog, long-term synaptic facilitation factor.	0.640
SHISAL1	PGM5	ENSCAFP00000001246	ENSCAFP00000002837	Shisa like 1.	Phosphoglucomutase 5; Belongs to the phosphohexose mutase family.	0.493
SHISAL1	POLR1B	ENSCAFP00000001246	ENSCAFP00000010651	Shisa like 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.495