HNRNPA0 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HNRNPA0

Heterogeneous nuclear ribonucleoprotein A0. (310 aa)

Predicted Functional Partners:

NPLOC4

0.728

ATP9A

0.645

SRSF2

0.635

BIRC6

0.543

MAPKAPK3

0.533

FXR2

0.523

ALYREF

0.518

ENSCAFP00000051708

0.504

PLA2G4F

0.499

J9NS74_CANLF

0.498

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALYREF	ENSCAFP00000051708	ENSCAFP00000008786	ENSCAFP00000051708	Aly/REF export factor.	Uncharacterized protein.	0.448
ALYREF	HNRNPA0	ENSCAFP00000008786	ENSCAFP00000001592	Aly/REF export factor.	Heterogeneous nuclear ribonucleoprotein A0.	0.518
ALYREF	J9NS74_CANLF	ENSCAFP00000008786	ENSCAFP00000036349	Aly/REF export factor.	RRM domain-containing protein.	0.490
ALYREF	SRSF2	ENSCAFP00000008786	ENSCAFP00000007679	Aly/REF export factor.	Serine and arginine rich splicing factor 2.	0.610
ATP9A	FXR2	ENSCAFP00000017215	ENSCAFP00000052542	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	FMR1 autosomal homolog 2.	0.562
ATP9A	HNRNPA0	ENSCAFP00000017215	ENSCAFP00000001592	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Heterogeneous nuclear ribonucleoprotein A0.	0.645
ATP9A	NPLOC4	ENSCAFP00000017215	ENSCAFP00000008625	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	NPL4 homolog, ubiquitin recognition factor.	0.792
BIRC6	HNRNPA0	ENSCAFP00000008679	ENSCAFP00000001592	Baculoviral IAP repeat containing 6.	Heterogeneous nuclear ribonucleoprotein A0.	0.543
BIRC6	NPLOC4	ENSCAFP00000008679	ENSCAFP00000008625	Baculoviral IAP repeat containing 6.	NPL4 homolog, ubiquitin recognition factor.	0.419
ENSCAFP00000051708	ALYREF	ENSCAFP00000051708	ENSCAFP00000008786	Uncharacterized protein.	Aly/REF export factor.	0.448
ENSCAFP00000051708	HNRNPA0	ENSCAFP00000051708	ENSCAFP00000001592	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein A0.	0.504
ENSCAFP00000051708	J9NS74_CANLF	ENSCAFP00000051708	ENSCAFP00000036349	Uncharacterized protein.	RRM domain-containing protein.	0.440
FXR2	ATP9A	ENSCAFP00000052542	ENSCAFP00000017215	FMR1 autosomal homolog 2.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.562
FXR2	HNRNPA0	ENSCAFP00000052542	ENSCAFP00000001592	FMR1 autosomal homolog 2.	Heterogeneous nuclear ribonucleoprotein A0.	0.523
FXR2	NPLOC4	ENSCAFP00000052542	ENSCAFP00000008625	FMR1 autosomal homolog 2.	NPL4 homolog, ubiquitin recognition factor.	0.695
HNRNPA0	ALYREF	ENSCAFP00000001592	ENSCAFP00000008786	Heterogeneous nuclear ribonucleoprotein A0.	Aly/REF export factor.	0.518
HNRNPA0	ATP9A	ENSCAFP00000001592	ENSCAFP00000017215	Heterogeneous nuclear ribonucleoprotein A0.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.645
HNRNPA0	BIRC6	ENSCAFP00000001592	ENSCAFP00000008679	Heterogeneous nuclear ribonucleoprotein A0.	Baculoviral IAP repeat containing 6.	0.543
HNRNPA0	ENSCAFP00000051708	ENSCAFP00000001592	ENSCAFP00000051708	Heterogeneous nuclear ribonucleoprotein A0.	Uncharacterized protein.	0.504
HNRNPA0	FXR2	ENSCAFP00000001592	ENSCAFP00000052542	Heterogeneous nuclear ribonucleoprotein A0.	FMR1 autosomal homolog 2.	0.523