STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC39BTetratricopeptide repeat domain 39B. (634 aa)    
Predicted Functional Partners:
VAPB
VAMP associated protein B and C.
    
 
 0.679
MCTP1
Multiple C2 and transmembrane domain containing 1.
      
 0.602
SLAMF6
SLAM family member 6.
    
 
 0.597
CRTAM
Cytotoxic and regulatory T cell molecule.
      
 0.595
CYTIP
Cytohesin 1 interacting protein.
   
  
 0.594
ACAP1
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1.
      
 0.592
FCRL5
Fc receptor like 5.
      
 0.591
GPR183
G protein-coupled receptor 183; Belongs to the G-protein coupled receptor 1 family.
      
 0.534
CLIC2
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
      
 0.534
MAP4K1
Mitogen-activated protein kinase kinase kinase kinase 1; May play a role in the response to environmental stress. Appears to act upstream of the JUN N-terminal pathway.
      
 0.519
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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