YIPF7 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

YIPF7

Protein YIPF. (276 aa)

Predicted Functional Partners:

BEND4

0.774

LRRC66

0.774

USP46

0.772

PDCL2

0.691

GSX2

0.688

RABAC1

0.630

HTATSF1

0.629

KCTD8

0.625

YIF1B

0.621

YIF1A

0.621

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BEND4	GSX2	ENSCAFP00000002626	ENSCAFP00000003023	BEN domain containing 4.	GS homeobox 2.	0.688
BEND4	HTATSF1	ENSCAFP00000002626	ENSCAFP00000038771	BEN domain containing 4.	Uncharacterized protein.	0.657
BEND4	KCTD8	ENSCAFP00000002626	ENSCAFP00000002672	BEN domain containing 4.	Potassium channel tetramerization domain containing 8.	0.622
BEND4	LRRC66	ENSCAFP00000002626	ENSCAFP00000033683	BEN domain containing 4.	Leucine rich repeat containing 66.	0.778
BEND4	PDCL2	ENSCAFP00000002626	ENSCAFP00000003160	BEN domain containing 4.	Phosducin like 2.	0.737
BEND4	USP46	ENSCAFP00000002626	ENSCAFP00000035240	BEN domain containing 4.	Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.	0.772
BEND4	YIPF7	ENSCAFP00000002626	ENSCAFP00000002676	BEN domain containing 4.	Protein YIPF.	0.774
GSX2	BEND4	ENSCAFP00000003023	ENSCAFP00000002626	GS homeobox 2.	BEN domain containing 4.	0.688
GSX2	HTATSF1	ENSCAFP00000003023	ENSCAFP00000038771	GS homeobox 2.	Uncharacterized protein.	0.599
GSX2	KCTD8	ENSCAFP00000003023	ENSCAFP00000002672	GS homeobox 2.	Potassium channel tetramerization domain containing 8.	0.594
GSX2	LRRC66	ENSCAFP00000003023	ENSCAFP00000033683	GS homeobox 2.	Leucine rich repeat containing 66.	0.689
GSX2	PDCL2	ENSCAFP00000003023	ENSCAFP00000003160	GS homeobox 2.	Phosducin like 2.	0.618
GSX2	USP46	ENSCAFP00000003023	ENSCAFP00000035240	GS homeobox 2.	Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.	0.693
GSX2	YIPF7	ENSCAFP00000003023	ENSCAFP00000002676	GS homeobox 2.	Protein YIPF.	0.688
HTATSF1	BEND4	ENSCAFP00000038771	ENSCAFP00000002626	Uncharacterized protein.	BEN domain containing 4.	0.657
HTATSF1	GSX2	ENSCAFP00000038771	ENSCAFP00000003023	Uncharacterized protein.	GS homeobox 2.	0.599
HTATSF1	KCTD8	ENSCAFP00000038771	ENSCAFP00000002672	Uncharacterized protein.	Potassium channel tetramerization domain containing 8.	0.592
HTATSF1	LRRC66	ENSCAFP00000038771	ENSCAFP00000033683	Uncharacterized protein.	Leucine rich repeat containing 66.	0.668
HTATSF1	PDCL2	ENSCAFP00000038771	ENSCAFP00000003160	Uncharacterized protein.	Phosducin like 2.	0.630
HTATSF1	USP46	ENSCAFP00000038771	ENSCAFP00000035240	Uncharacterized protein.	Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.	0.629