STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM48RNA binding motif protein 48. (367 aa)    
Predicted Functional Partners:
ARMC7
Armadillo repeat containing 7.
  
 
 0.945
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
   0.724
PRPF8
Pre-mRNA processing factor 8.
   
   0.723
PCCB
Propionyl-CoA carboxylase subunit beta.
   
 
 0.623
MCCC2
Methylcrotonoyl-CoA carboxylase 2.
   
 
 0.617
TUBGCP5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
   
 
 0.617
CRIPT
CXXC repeat containing interactor of PDZ3 domain.
   
 
 0.606
MRPS5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.592
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.585
SCNM1
Sodium channel modifier 1.
   
 
 0.571
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.