STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM48RNA binding motif protein 48. (367 aa)    
Predicted Functional Partners:
ARMC7
Armadillo repeat containing 7.
  
 
 
 0.969
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
 
 0.776
PRPF8
Pre-mRNA processing factor 8.
    
   0.769
SCNM1
Sodium channel modifier 1.
    
 
 0.654
CRIPT
CXXC repeat containing interactor of PDZ3 domain.
   
 
 0.609
MCCC2
Methylcrotonoyl-CoA carboxylase 2.
   
 0.607
PCCB
Propionyl-CoA carboxylase subunit beta.
   
 0.607
SF3B3
Splicing factor 3b subunit 3.
   
 
 0.598
ZNF330
Zinc finger protein 330.
    
 
 0.597
CWC27
CWC27 spliceosome associated cyclophilin.
   
   0.596
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.