FAM214B protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAM214B

Family with sequence similarity 214 member B. (536 aa)

Predicted Functional Partners:

KIF20A

0.769

CENPT

0.670

DNAJA3

0.589

TMEM87B

0.578

PPP2R2D

0.573

RHNO1

0.556

ZC3H11A

0.540

ZNHIT1

0.528

C2CD5

0.524

KIF20B

0.510

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2CD5	FAM214B	ENSCAFP00000060128	ENSCAFP00000002963	C2 calcium dependent domain containing 5.	Family with sequence similarity 214 member B.	0.524
C2CD5	RHNO1	ENSCAFP00000060128	ENSCAFP00000022962	C2 calcium dependent domain containing 5.	RAD9-HUS1-RAD1 interacting nuclear orphan 1.	0.492
C2CD5	TMEM87B	ENSCAFP00000060128	ENSCAFP00000031545	C2 calcium dependent domain containing 5.	Transmembrane protein 87B.	0.525
C2CD5	ZNHIT1	ENSCAFP00000060128	ENSCAFP00000039390	C2 calcium dependent domain containing 5.	Zinc finger HIT-type containing 1.	0.478
CENPT	FAM214B	ENSCAFP00000030175	ENSCAFP00000002963	Centromere protein T.	Family with sequence similarity 214 member B.	0.670
DNAJA3	FAM214B	ENSCAFP00000045248	ENSCAFP00000002963	DnaJ heat shock protein family (Hsp40) member A3.	Family with sequence similarity 214 member B.	0.589
FAM214B	C2CD5	ENSCAFP00000002963	ENSCAFP00000060128	Family with sequence similarity 214 member B.	C2 calcium dependent domain containing 5.	0.524
FAM214B	CENPT	ENSCAFP00000002963	ENSCAFP00000030175	Family with sequence similarity 214 member B.	Centromere protein T.	0.670
FAM214B	DNAJA3	ENSCAFP00000002963	ENSCAFP00000045248	Family with sequence similarity 214 member B.	DnaJ heat shock protein family (Hsp40) member A3.	0.589
FAM214B	KIF20A	ENSCAFP00000002963	ENSCAFP00000001720	Family with sequence similarity 214 member B.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.769
FAM214B	KIF20B	ENSCAFP00000002963	ENSCAFP00000039345	Family with sequence similarity 214 member B.	Kinesin family member 20B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.510
FAM214B	PPP2R2D	ENSCAFP00000002963	ENSCAFP00000040366	Family with sequence similarity 214 member B.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.573
FAM214B	RHNO1	ENSCAFP00000002963	ENSCAFP00000022962	Family with sequence similarity 214 member B.	RAD9-HUS1-RAD1 interacting nuclear orphan 1.	0.556
FAM214B	TMEM87B	ENSCAFP00000002963	ENSCAFP00000031545	Family with sequence similarity 214 member B.	Transmembrane protein 87B.	0.578
FAM214B	ZC3H11A	ENSCAFP00000002963	ENSCAFP00000014122	Family with sequence similarity 214 member B.	Uncharacterized protein.	0.540
FAM214B	ZNHIT1	ENSCAFP00000002963	ENSCAFP00000039390	Family with sequence similarity 214 member B.	Zinc finger HIT-type containing 1.	0.528
KIF20A	FAM214B	ENSCAFP00000001720	ENSCAFP00000002963	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Family with sequence similarity 214 member B.	0.769
KIF20A	KIF20B	ENSCAFP00000001720	ENSCAFP00000039345	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin family member 20B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.907
KIF20B	FAM214B	ENSCAFP00000039345	ENSCAFP00000002963	Kinesin family member 20B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Family with sequence similarity 214 member B.	0.510
KIF20B	KIF20A	ENSCAFP00000039345	ENSCAFP00000001720	Kinesin family member 20B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.907