CASD1 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CASD1

CAS1 domain containing 1. (863 aa)

Predicted Functional Partners:

SIAE

0.803

ST6GALNAC1

0.724

SLC35B2

0.695

B4GALNT2

0.687

XYLT2

0.620

GGTA1P

0.599

B4GALT7

0.599

GGT1

0.591

NEU4

0.581

CYB5RL

0.570

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4GALNT2	CASD1	ENSCAFP00000024871	ENSCAFP00000003077	Beta-1,4-N-acetyl-galactosaminyltransferase 2.	CAS1 domain containing 1.	0.687
B4GALNT2	CYB5RL	ENSCAFP00000024871	ENSCAFP00000065922	Beta-1,4-N-acetyl-galactosaminyltransferase 2.	Cytochrome b5 reductase like.	0.540
B4GALNT2	GGT1	ENSCAFP00000024871	ENSCAFP00000055778	Beta-1,4-N-acetyl-galactosaminyltransferase 2.	Uncharacterized protein.	0.535
B4GALNT2	GGTA1P	ENSCAFP00000024871	ENSCAFP00000046502	Beta-1,4-N-acetyl-galactosaminyltransferase 2.	Uncharacterized protein.	0.776
B4GALNT2	NEU4	ENSCAFP00000024871	ENSCAFP00000061572	Beta-1,4-N-acetyl-galactosaminyltransferase 2.	Sialidase domain-containing protein.	0.699
B4GALT7	CASD1	ENSCAFP00000064012	ENSCAFP00000003077	Beta-1,4-galactosyltransferase 7.	CAS1 domain containing 1.	0.599
B4GALT7	SLC35B2	ENSCAFP00000064012	ENSCAFP00000002916	Beta-1,4-galactosyltransferase 7.	Solute carrier family 35 member B2.	0.827
B4GALT7	XYLT2	ENSCAFP00000064012	ENSCAFP00000025069	Beta-1,4-galactosyltransferase 7.	Xylosyltransferase 2; Catalyzes the first step in the biosynthesis of chondroitin sulfate, heparan sulfate and dermatan sulfate proteoglycans, such as DCN (By similarity). Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein (By similarity). Belongs to the glycosyltransferase 14 family. XylT subfamily.	0.968
CASD1	B4GALNT2	ENSCAFP00000003077	ENSCAFP00000024871	CAS1 domain containing 1.	Beta-1,4-N-acetyl-galactosaminyltransferase 2.	0.687
CASD1	B4GALT7	ENSCAFP00000003077	ENSCAFP00000064012	CAS1 domain containing 1.	Beta-1,4-galactosyltransferase 7.	0.599
CASD1	CYB5RL	ENSCAFP00000003077	ENSCAFP00000065922	CAS1 domain containing 1.	Cytochrome b5 reductase like.	0.570
CASD1	GGT1	ENSCAFP00000003077	ENSCAFP00000055778	CAS1 domain containing 1.	Uncharacterized protein.	0.591
CASD1	GGTA1P	ENSCAFP00000003077	ENSCAFP00000046502	CAS1 domain containing 1.	Uncharacterized protein.	0.599
CASD1	NEU4	ENSCAFP00000003077	ENSCAFP00000061572	CAS1 domain containing 1.	Sialidase domain-containing protein.	0.581
CASD1	SIAE	ENSCAFP00000003077	ENSCAFP00000016467	CAS1 domain containing 1.	Sialic acid acetylesterase.	0.803
CASD1	SLC35B2	ENSCAFP00000003077	ENSCAFP00000002916	CAS1 domain containing 1.	Solute carrier family 35 member B2.	0.695
CASD1	ST6GALNAC1	ENSCAFP00000003077	ENSCAFP00000049193	CAS1 domain containing 1.	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.	0.724
CASD1	XYLT2	ENSCAFP00000003077	ENSCAFP00000025069	CAS1 domain containing 1.	Xylosyltransferase 2; Catalyzes the first step in the biosynthesis of chondroitin sulfate, heparan sulfate and dermatan sulfate proteoglycans, such as DCN (By similarity). Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein (By similarity). Belongs to the glycosyltransferase 14 family. XylT subfamily.	0.620
CYB5RL	B4GALNT2	ENSCAFP00000065922	ENSCAFP00000024871	Cytochrome b5 reductase like.	Beta-1,4-N-acetyl-galactosaminyltransferase 2.	0.540
CYB5RL	CASD1	ENSCAFP00000065922	ENSCAFP00000003077	Cytochrome b5 reductase like.	CAS1 domain containing 1.	0.570