PDCL2 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

PDCL2

Phosducin like 2. (242 aa)

Predicted Functional Partners:

LOC480641

0.815

CCT4

0.758

CCT3

0.741

PPIC

0.741

BEND4

0.737

TCP1

0.719

LRRC66

0.719

CCT5

0.713

USP46

0.697

YIPF7

0.691

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BEND4	LRRC66	ENSCAFP00000002626	ENSCAFP00000033683	BEN domain containing 4.	Leucine rich repeat containing 66.	0.778
BEND4	PDCL2	ENSCAFP00000002626	ENSCAFP00000003160	BEN domain containing 4.	Phosducin like 2.	0.737
BEND4	USP46	ENSCAFP00000002626	ENSCAFP00000035240	BEN domain containing 4.	Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.	0.772
BEND4	YIPF7	ENSCAFP00000002626	ENSCAFP00000002676	BEN domain containing 4.	Protein YIPF.	0.774
CCT3	CCT4	ENSCAFP00000034400	ENSCAFP00000004593	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit delta.	0.999
CCT3	CCT5	ENSCAFP00000034400	ENSCAFP00000014829	T-complex protein 1 subunit gamma.	Chaperonin containing TCP1 subunit 5.	0.999
CCT3	PDCL2	ENSCAFP00000034400	ENSCAFP00000003160	T-complex protein 1 subunit gamma.	Phosducin like 2.	0.741
CCT3	TCP1	ENSCAFP00000034400	ENSCAFP00000001046	T-complex protein 1 subunit gamma.	T-complex 1.	0.999
CCT4	CCT3	ENSCAFP00000004593	ENSCAFP00000034400	T-complex protein 1 subunit delta.	T-complex protein 1 subunit gamma.	0.999
CCT4	CCT5	ENSCAFP00000004593	ENSCAFP00000014829	T-complex protein 1 subunit delta.	Chaperonin containing TCP1 subunit 5.	0.999
CCT4	PDCL2	ENSCAFP00000004593	ENSCAFP00000003160	T-complex protein 1 subunit delta.	Phosducin like 2.	0.758
CCT4	TCP1	ENSCAFP00000004593	ENSCAFP00000001046	T-complex protein 1 subunit delta.	T-complex 1.	0.999
CCT5	CCT3	ENSCAFP00000014829	ENSCAFP00000034400	Chaperonin containing TCP1 subunit 5.	T-complex protein 1 subunit gamma.	0.999
CCT5	CCT4	ENSCAFP00000014829	ENSCAFP00000004593	Chaperonin containing TCP1 subunit 5.	T-complex protein 1 subunit delta.	0.999
CCT5	PDCL2	ENSCAFP00000014829	ENSCAFP00000003160	Chaperonin containing TCP1 subunit 5.	Phosducin like 2.	0.713
CCT5	TCP1	ENSCAFP00000014829	ENSCAFP00000001046	Chaperonin containing TCP1 subunit 5.	T-complex 1.	0.999
LOC480641	PDCL2	ENSCAFP00000028225	ENSCAFP00000003160	ACB domain-containing protein.	Phosducin like 2.	0.815
LOC480641	PPIC	ENSCAFP00000028225	ENSCAFP00000036987	ACB domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.825
LRRC66	BEND4	ENSCAFP00000033683	ENSCAFP00000002626	Leucine rich repeat containing 66.	BEN domain containing 4.	0.778
LRRC66	PDCL2	ENSCAFP00000033683	ENSCAFP00000003160	Leucine rich repeat containing 66.	Phosducin like 2.	0.719