UBA6 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBA6

Ubiquitin like modifier activating enzyme 6. (1980 aa)

Predicted Functional Partners:

UBE2K

0.945

UBA7

0.912

UBE2G1

0.895

UBE2Z

0.866

RPS27A

0.861

ENSCAFP00000050780

0.861

UBB

0.833

UBE2M

0.804

UBE2L3

0.804

UBE2F

0.799

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAFP00000050780	RPS27A	ENSCAFP00000050780	ENSCAFP00000031429	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.405
ENSCAFP00000050780	UBA6	ENSCAFP00000050780	ENSCAFP00000004058	Ubiquitin-like domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.861
ENSCAFP00000050780	UBA7	ENSCAFP00000050780	ENSCAFP00000016471	Ubiquitin-like domain-containing protein.	Ubiquitin like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.816
ENSCAFP00000050780	UBB	ENSCAFP00000050780	ENSCAFP00000063279	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.986
ENSCAFP00000050780	UBE2F	ENSCAFP00000050780	ENSCAFP00000050503	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 F (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.654
ENSCAFP00000050780	UBE2G1	ENSCAFP00000050780	ENSCAFP00000065096	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.	0.872
ENSCAFP00000050780	UBE2K	ENSCAFP00000050780	ENSCAFP00000023490	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.987
ENSCAFP00000050780	UBE2L3	ENSCAFP00000050780	ENSCAFP00000050274	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.	0.670
ENSCAFP00000050780	UBE2M	ENSCAFP00000050780	ENSCAFP00000003404	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.	0.654
ENSCAFP00000050780	UBE2Z	ENSCAFP00000050780	ENSCAFP00000024843	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 Z.	0.588
RPS27A	ENSCAFP00000050780	ENSCAFP00000031429	ENSCAFP00000050780	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.405
RPS27A	UBA6	ENSCAFP00000031429	ENSCAFP00000004058	Ubiquitin-like domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.861
RPS27A	UBA7	ENSCAFP00000031429	ENSCAFP00000016471	Ubiquitin-like domain-containing protein.	Ubiquitin like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.963
RPS27A	UBB	ENSCAFP00000031429	ENSCAFP00000063279	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.997
RPS27A	UBE2F	ENSCAFP00000031429	ENSCAFP00000050503	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 F (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.660
RPS27A	UBE2G1	ENSCAFP00000031429	ENSCAFP00000065096	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.	0.872
RPS27A	UBE2K	ENSCAFP00000031429	ENSCAFP00000023490	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.987
RPS27A	UBE2L3	ENSCAFP00000031429	ENSCAFP00000050274	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.	0.934
RPS27A	UBE2M	ENSCAFP00000031429	ENSCAFP00000003404	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.	0.654
RPS27A	UBE2Z	ENSCAFP00000031429	ENSCAFP00000024843	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 Z.	0.588